Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QNH74_RS06045 Genome accession   NZ_OX352806
Coordinates   1218127..1218966 (-) Length   279 a.a.
NCBI ID   WP_024417501.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_dxerD_hsdSA     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1213127..1223966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH74_RS06030 uidA 1213465..1215264 (-) 1800 WP_024417499.1 beta-glucuronidase -
  QNH74_RS06035 - 1215280..1216308 (-) 1029 WP_013730404.1 sugar kinase -
  QNH74_RS06040 - 1216364..1217940 (-) 1577 Protein_1158 MFS transporter -
  QNH74_RS06045 endA 1218127..1218966 (-) 840 WP_024417501.1 DNA/RNA non-specific endonuclease Machinery gene
  QNH74_RS06050 - 1218996..1219187 (-) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  QNH74_RS06055 murA 1219180..1220463 (-) 1284 WP_024417502.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QNH74_RS06060 - 1220488..1220712 (-) 225 WP_024387485.1 DUF1146 family protein -
  QNH74_RS06065 - 1220772..1221188 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  QNH74_RS06070 atpD 1221198..1222604 (-) 1407 WP_024417504.1 F0F1 ATP synthase subunit beta -
  QNH74_RS06075 - 1222624..1223502 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30187.41 Da        Isoelectric Point: 6.2370

>NTDB_id=1155361 QNH74_RS06045 WP_024417501.1 1218127..1218966(-) (endA) [Streptococcus suis isolate 861160_dxerD_hsdSA]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGIPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1155361 QNH74_RS06045 WP_024417501.1 1218127..1218966(-) (endA) [Streptococcus suis isolate 861160_dxerD_hsdSA]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCATAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTACCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591

Multiple sequence alignment