Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AD178_RS09245 Genome accession   NZ_OX244288
Coordinates   1796505..1797326 (-) Length   273 a.a.
NCBI ID   WP_000601679.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PT8105 isolate 2RLC4     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1797997..1810399 1796505..1797326 flank 671


Gene organization within MGE regions


Location: 1796505..1810399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD178_RS09245 (SAMEA1463109_01865) rcrP 1796505..1797326 (-) 822 WP_000601679.1 ABC transporter permease Regulator
  AD178_RS09250 (SAMEA1463109_01866) - 1797343..1797814 (-) 472 Protein_1816 MarR family winged helix-turn-helix transcriptional regulator -
  AD178_RS09255 (SAMEA1463109_01867) - 1798033..1799289 (+) 1257 WP_000436255.1 ISL3-like element IS1167A family transposase -
  AD178_RS09260 (SAMEA1463109_01868) - 1799360..1800076 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AD178_RS09265 (SAMEA1463109_01869) ply 1800957..1802372 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  AD178_RS09270 (SAMEA1463109_01870) - 1802383..1802793 (-) 411 WP_000595758.1 hypothetical protein -
  AD178_RS09275 (SAMEA1463109_01871) - 1802786..1803394 (-) 609 WP_000083614.1 hypothetical protein -
  AD178_RS09280 (SAMEA1463109_01872) - 1803407..1803865 (-) 459 WP_000186955.1 DUF4231 domain-containing protein -
  AD178_RS09285 (SAMEA1463109_01874) - 1803990..1804389 (+) 400 Protein_1823 transposase family protein -
  AD178_RS09290 (SAMEA1463109_01875) - 1805153..1805413 (-) 261 WP_001209198.1 hypothetical protein -
  AD178_RS09295 (SAMEA1463109_01876) - 1805472..1806023 (-) 552 WP_001111264.1 hypothetical protein -
  AD178_RS09300 (SAMEA1463109_01877) - 1806013..1807008 (-) 996 WP_001101207.1 hypothetical protein -
  AD178_RS09305 (SAMEA1463109_01878) - 1807416..1807841 (-) 426 WP_000204073.1 hypothetical protein -
  AD178_RS09310 (SAMEA1463109_01879) - 1807970..1808329 (-) 360 WP_001812691.1 hypothetical protein -
  AD178_RS09315 (SAMEA1463109_01880) - 1808375..1808581 (-) 207 WP_000366093.1 hypothetical protein -
  AD178_RS09320 (SAMEA1463109_01881) - 1808568..1808729 (-) 162 WP_001055999.1 helix-turn-helix domain-containing protein -
  AD178_RS09325 (SAMEA1463109_01882) - 1809143..1810399 (+) 1257 WP_000530084.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30546.09 Da        Isoelectric Point: 5.9310

>NTDB_id=1154344 AD178_RS09245 WP_000601679.1 1796505..1797326(-) (rcrP) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVAVIINVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLGV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=1154344 AD178_RS09245 WP_000601679.1 1796505..1797326(-) (rcrP) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTATCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGGGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.895

100

0.604

Multiple sequence alignment