Detailed information NTG0115329

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BAMY6614_RS11545
• Genome accession: NZ_CP006960
• Coordinates: 2346928..2347707 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens UMAF6614
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2341928..2352707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6614_RS11525 (BAMY6614_12165)	trmFO	2342615..2343922 (+)	1308	WP_061862190.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BAMY6614_RS11530 (BAMY6614_12170)	xerC	2343992..2344909 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
BAMY6614_RS11535 (BAMY6614_12175)	hslV	2344925..2345470 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
BAMY6614_RS11540 (BAMY6614_12180)	hslU	2345487..2346890 (+)	1404	WP_061862191.1	HslU--HslV peptidase ATPase subunit	-
BAMY6614_RS11545 (BAMY6614_12185)	codY	2346928..2347707 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BAMY6614_RS11550 (BAMY6614_12190)	flgB	2348061..2348450 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
BAMY6614_RS11555 (BAMY6614_12195)	flgC	2348450..2348902 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
BAMY6614_RS11560 (BAMY6614_12200)	fliE	2348913..2349233 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BAMY6614_RS11565 (BAMY6614_12205)	fliF	2349276..2350886 (+)	1611	WP_022553346.1	flagellar basal-body MS-ring/collar protein FliF	-
BAMY6614_RS11570 (BAMY6614_12210)	fliG	2350899..2351915 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BAMY6614_RS11575 (BAMY6614_12215)	fliH	2351908..2352663 (+)	756	WP_017417778.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=115329 BAMY6614_RS11545 WP_003154263.1 2346928..2347707(+) (codY) [Bacillus amyloliquefaciens UMAF6614]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=115329 BAMY6614_RS11545 WP_003154263.1 2346928..2347707(+) (codY) [Bacillus amyloliquefaciens UMAF6614]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471