Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RG26_RS10925 Genome accession   NZ_CP010119
Coordinates   2120354..2120821 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain C3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2115354..2125821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG26_RS10895 (RG26_10290) rpsG 2115495..2115965 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  RG26_RS10900 (RG26_10295) fusA 2116062..2118176 (+) 2115 WP_000124700.1 elongation factor G -
  RG26_RS10905 (RG26_10300) tuf 2118247..2119431 (+) 1185 WP_000031783.1 elongation factor Tu -
  RG26_RS10915 (RG26_10305) bfd 2119614..2119808 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RG26_RS10920 (RG26_10310) bfr 2119881..2120357 (+) 477 WP_000675515.1 bacterioferritin -
  RG26_RS10925 (RG26_10315) pilD 2120354..2120821 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  RG26_RS10935 (RG26_10325) rpsJ 2121200..2121511 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  RG26_RS10940 (RG26_10330) rplC 2121544..2122173 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  RG26_RS10945 (RG26_10335) rplD 2122184..2122789 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  RG26_RS10950 (RG26_10340) rplW 2122786..2123088 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  RG26_RS10955 (RG26_10345) rplB 2123106..2123927 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  RG26_RS10960 (RG26_10350) rpsS 2123944..2124222 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  RG26_RS10965 (RG26_10355) rplV 2124237..2124569 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  RG26_RS10970 (RG26_10360) rpsC 2124587..2125288 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  RG26_RS10975 (RG26_10365) rplP 2125301..2125711 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=115273 RG26_RS10925 WP_000339836.1 2120354..2120821(-) (pilD) [Escherichia coli strain C3]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=115273 RG26_RS10925 WP_000339836.1 2120354..2120821(-) (pilD) [Escherichia coli strain C3]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361