Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   NBW44_RS01305 Genome accession   NZ_OW724079
Coordinates   235164..236111 (+) Length   315 a.a.
NCBI ID   WP_250306883.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230164..241111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS01280 - 230235..231020 (+) 786 WP_250306878.1 DUF6612 family protein -
  NBW44_RS01285 - 231039..231968 (+) 930 WP_250306879.1 hypothetical protein -
  NBW44_RS01290 - 232223..233116 (+) 894 WP_250306880.1 ABC transporter ATP-binding protein -
  NBW44_RS01295 - 233113..234312 (+) 1200 WP_250306881.1 ABC transporter permease -
  NBW44_RS01300 rpoE 234489..235064 (+) 576 WP_349815536.1 DNA-directed RNA polymerase subunit delta -
  NBW44_RS01305 comYH 235164..236111 (+) 948 WP_250306883.1 class I SAM-dependent methyltransferase Machinery gene
  NBW44_RS01310 - 236166..237353 (+) 1188 WP_250306884.1 acetate kinase -
  NBW44_RS01315 birA 237410..238345 (-) 936 WP_250306885.1 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA -
  NBW44_RS01320 - 238560..239750 (+) 1191 WP_250306886.1 O-antigen ligase -
  NBW44_RS01325 - 239793..240341 (-) 549 WP_250306887.1 NADPH-dependent FMN reductase -
  NBW44_RS01330 - 240612..241100 (+) 489 WP_250306888.1 DUF5590 domain-containing protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35588.68 Da        Isoelectric Point: 4.3160

>NTDB_id=1152582 NBW44_RS01305 WP_250306883.1 235164..236111(+) (comYH) [Streptococcus sp. Marseille-Q3533]
MDFEKIEQAYTYLLENIQIIQNDLATNFYDALIEQNSIYLDGQTNLQVIEDNNKSLKRLALRKEEWLRTYQFLLMKAAQT
EPLQANHQFTPDTVALLLIFIIEELWPAQELNLLELGSGMGILGASFLTSLDKKVDYLGVEIDDLLIDLAASITEVIGLP
AVYAQGDAVRPQILKESDIIVSDLPIGYYPDDQVASRYEVAASDEHTYAHHLLMEQSLKYLKNGGFAIFLAPSNLLSSPQ
SDLLKLWLKKNAQLVAMITLPENLFSQGSNSKAIFVLQKKGSTAVEPFVYPLSNLRDSQELADFKEKFQIWSQYS

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1152582 NBW44_RS01305 WP_250306883.1 235164..236111(+) (comYH) [Streptococcus sp. Marseille-Q3533]
ATGGATTTTGAAAAAATTGAACAAGCATATACATACTTATTAGAGAATATTCAAATCATTCAAAATGATTTGGCAACAAA
TTTTTACGATGCCTTGATTGAGCAAAATAGCATTTATCTAGATGGGCAAACTAATCTTCAGGTTATTGAGGACAATAACA
AATCTTTAAAGAGATTGGCTCTGAGAAAAGAGGAGTGGCTTAGAACCTATCAGTTTCTCTTGATGAAAGCTGCTCAGACA
GAACCCCTTCAAGCAAATCATCAGTTTACACCGGATACAGTAGCCCTATTGCTTATTTTTATAATTGAGGAACTATGGCC
AGCCCAAGAATTAAATCTGTTAGAATTAGGATCTGGTATGGGGATATTGGGTGCAAGTTTTTTGACCTCGCTGGATAAAA
AAGTTGATTATTTAGGAGTCGAAATTGATGATCTTTTAATTGATTTGGCTGCTAGTATTACAGAGGTAATCGGTCTTCCA
GCTGTTTATGCTCAGGGGGATGCGGTGCGACCACAAATTTTAAAGGAAAGTGATATCATTGTTAGTGATTTACCTATCGG
TTACTACCCAGATGATCAAGTTGCCTCACGTTATGAAGTTGCGGCGTCAGACGAACATACTTACGCTCACCATTTATTGA
TGGAACAGTCGCTTAAATACCTAAAAAATGGAGGTTTTGCAATTTTTCTAGCTCCAAGCAATCTTTTATCCAGTCCTCAA
AGCGATCTTTTAAAATTGTGGTTGAAAAAGAATGCTCAACTTGTTGCCATGATTACTTTACCAGAAAATCTCTTTAGTCA
AGGTAGCAATTCTAAGGCTATTTTTGTTCTGCAAAAGAAAGGTTCAACAGCTGTAGAACCTTTCGTGTATCCATTAAGTA
ATCTACGTGATTCTCAGGAATTGGCAGACTTTAAAGAAAAGTTTCAAATTTGGAGTCAATATTCATGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

53.355

99.365

0.53
  comYH Streptococcus mutans UA140

53.035

99.365

0.527

Multiple sequence alignment