Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NBW67_RS11715 Genome accession   NZ_OW703833
Coordinates   2609735..2611573 (-) Length   612 a.a.
NCBI ID   WP_250235950.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis isolate hadza_2261_Bf14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2604735..2616573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW67_RS11690 - 2605852..2606499 (+) 648 WP_032743824.1 hypothetical protein -
  NBW67_RS11695 - 2606490..2606867 (+) 378 WP_071477619.1 hypothetical protein -
  NBW67_RS11700 rsmI 2606894..2607904 (-) 1011 WP_065474716.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NBW67_RS11710 - 2608468..2609583 (+) 1116 WP_250235952.1 FAD:protein FMN transferase -
  NBW67_RS11715 rcrQ 2609735..2611573 (-) 1839 WP_250235950.1 ABC transporter ATP-binding protein Regulator
  NBW67_RS11720 rcrP 2611646..2613517 (-) 1872 WP_193641777.1 ABC transporter ATP-binding protein Regulator
  NBW67_RS11725 - 2613752..2614282 (-) 531 WP_250235948.1 MarR family transcriptional regulator -
  NBW67_RS11730 - 2614412..2615935 (-) 1524 WP_250235946.1 amino acid permease -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67035.46 Da        Isoelectric Point: 6.4348

>NTDB_id=1152411 NBW67_RS11715 WP_250235950.1 2609735..2611573(-) (rcrQ) [Bifidobacterium longum subsp. infantis isolate hadza_2261_Bf14]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFNAVGRIAWTLVALYAGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMVIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYIRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGRDVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=1152411 NBW67_RS11715 WP_250235950.1 2609735..2611573(-) (rcrQ) [Bifidobacterium longum subsp. infantis isolate hadza_2261_Bf14]
ATGCCAAGAGGACCAATGGGCGGCAGGCGCGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCACTCATCCTGGGCGCGATCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTCAACGGCAGACCGGTGATGAACTCG
GTCGATTTCAACGCGGTCGGTCGTATCGCCTGGACTTTGGTGGCCCTGTACGCGGGATACGCCGTGCTCGGCTATGTGCA
GAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTGCGCGAATCGATCTCGGTCAAGATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCGCGCATCACCAACGATGTGGACGCCATTGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGTCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAGGCGGATTCCATCCGCCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAGCGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTGCTCGGCACGGACCATGCGGGCGGGCGCGACGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATCTCCGG
CGGCTCGATCGCGATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGAACCGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGTCTTGACCACTTCATCCGTTCGCTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACGTCCTCGGTCGACACCCGTACCGAGGAACTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGCACGTCG
TTCGTGATCGCCCATCGCCTCTCCACGATCCGTGACGCCGACATGATCCTCGTCATGAACCACGGCGATGTGATCGAACG
CGGCACCCATGACGAGCTGCTGGCTGCGGGCGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.252

96.078

0.521

Multiple sequence alignment