Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LSO74_RS00265 Genome accession   NZ_OV040719
Coordinates   56537..57049 (-) Length   170 a.a.
NCBI ID   WP_005651545.1    Uniprot ID   A0A0H3PJN2
Organism   Haemophilus influenzae strain 3655 isolate 3655     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51537..62049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO74_RS00250 (KRLU3655_LOCUS50) comQ 54843..55130 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  LSO74_RS00255 (KRLU3655_LOCUS51) comP 55123..55806 (-) 684 WP_005655925.1 DUF2572 family protein Machinery gene
  LSO74_RS00260 (KRLU3655_LOCUS52) comO 55821..56537 (-) 717 WP_005655922.1 type II secretion system protein J Machinery gene
  LSO74_RS00265 (KRLU3655_LOCUS53) comN 56537..57049 (-) 513 WP_005651545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LSO74_RS00270 (KRLU3655_LOCUS54) suhB 57249..58052 (+) 804 WP_005655917.1 inositol-1-monophosphatase -
  LSO74_RS00275 (KRLU3655_LOCUS55) nrfE 58160..60067 (+) 1908 WP_005655914.1 heme lyase NrfEFG subunit NrfE -
  LSO74_RS00280 (KRLU3655_LOCUS56) - 60067..60597 (+) 531 WP_005655912.1 DsbE family thiol:disulfide interchange protein -
  LSO74_RS00285 (KRLU3655_LOCUS57) nrfF 60594..61748 (+) 1155 WP_005655909.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19877.15 Da        Isoelectric Point: 8.9743

>NTDB_id=1151755 LSO74_RS00265 WP_005651545.1 56537..57049(-) (comN) [Haemophilus influenzae strain 3655 isolate 3655]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1151755 LSO74_RS00265 WP_005651545.1 56537..57049(-) (comN) [Haemophilus influenzae strain 3655 isolate 3655]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTATTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTCTACAAGCGGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PJN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988

Multiple sequence alignment