Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M7777_RS04560 Genome accession   NZ_OV024757
Coordinates   871212..872324 (-) Length   370 a.a.
NCBI ID   WP_010886768.1    Uniprot ID   -
Organism   Deinococcus radiodurans isolate DRR11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 866212..877324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M7777_RS04540 - 867190..868263 (+) 1074 WP_027480303.1 S-layer homology domain-containing protein -
  M7777_RS04545 accC 868376..869713 (-) 1338 WP_010886765.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  M7777_RS04550 accB 869802..870365 (-) 564 WP_027480302.1 acetyl-CoA carboxylase biotin carboxyl carrier protein -
  M7777_RS04555 efp 870564..871121 (-) 558 WP_010886767.1 elongation factor P -
  M7777_RS04560 dprA 871212..872324 (-) 1113 WP_010886768.1 DNA-processing protein DprA Machinery gene
  M7777_RS04565 - 872560..873723 (-) 1164 WP_027480301.1 tetratricopeptide repeat protein -
  M7777_RS04570 - 873868..874686 (+) 819 WP_346732446.1 metalloenzyme domain protein -
  M7777_RS04575 - 874923..875549 (-) 627 WP_010886771.1 N-(5'-phosphoribosyl)anthranilate isomerase -
  M7777_RS04580 - 875542..875826 (-) 285 WP_010886772.1 hypothetical protein -
  M7777_RS04585 - 875837..876352 (-) 516 WP_010886773.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 37775.19 Da        Isoelectric Point: 6.6652

>NTDB_id=1151701 M7777_RS04560 WP_010886768.1 871212..872324(-) (dprA) [Deinococcus radiodurans isolate DRR11]
MTLPSPAAAHAELLALLTLRFTPGLGPRRIENLRRHFGSAEAALAAPLTELRRVEGLDSRSVAAIGGAKAAEEARAELNK
AAERGVTLLGRGLPGYPAALEALGDPPAVLWVRGAGGAELLAGLGTVPHSVGIVGTRAASPHALALTRTIAGELAAAGVL
IVSGLARGVDTAAHTAALEAASGEASSPTIGVLGSAVDVIYPRENHDLAGRMVVVSEYPLGTGPAQHHFPSRNRVIAALS
AGVLVVEGERKSGSLITATHALDCGRTVFAVPGRAGDPRASGPHALIRDGAVLTESAQDVLTELNWGLAPAPAVPDLPPE
QARVLRALQTPATLDDLAATTGLSIPELQTALVMLQLQGLAYEVGGRWSR

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1151701 M7777_RS04560 WP_010886768.1 871212..872324(-) (dprA) [Deinococcus radiodurans isolate DRR11]
GTGACCCTTCCCTCCCCTGCTGCCGCCCACGCCGAACTGCTGGCCCTGCTCACCCTGCGGTTTACGCCCGGACTGGGGCC
ACGGCGCATCGAAAACCTGCGGCGGCATTTCGGCAGCGCGGAGGCGGCACTGGCGGCGCCTCTGACCGAGCTGCGGCGGG
TGGAGGGGCTGGACTCGCGTTCGGTGGCGGCGATTGGCGGGGCAAAAGCGGCAGAGGAGGCGCGGGCCGAACTGAACAAG
GCGGCAGAGCGCGGCGTCACCCTGCTCGGACGCGGTTTGCCCGGCTATCCGGCGGCGCTGGAAGCCCTGGGTGATCCGCC
CGCCGTGCTGTGGGTGCGGGGCGCGGGCGGCGCCGAGCTGCTCGCCGGGCTCGGCACCGTGCCGCACTCGGTGGGCATCG
TGGGCACGCGGGCAGCGAGTCCCCACGCGCTGGCGCTGACCCGGACCATCGCAGGCGAGCTGGCAGCAGCAGGCGTCCTC
ATCGTCAGCGGGCTGGCGCGGGGGGTGGACACGGCGGCGCACACGGCAGCCCTGGAAGCTGCAAGCGGGGAGGCGAGCAG
CCCCACCATCGGGGTGCTCGGCAGCGCGGTGGACGTGATTTATCCGCGTGAAAACCATGACCTCGCCGGGCGAATGGTGG
TCGTCAGCGAGTATCCGCTCGGCACCGGCCCGGCGCAGCACCACTTCCCGAGCCGCAACCGCGTCATCGCCGCGCTCTCG
GCGGGCGTGCTGGTGGTGGAAGGCGAGCGCAAGTCCGGTTCGCTCATCACCGCTACTCACGCGCTGGACTGCGGGCGCAC
CGTGTTCGCCGTGCCGGGGCGGGCCGGCGACCCCCGCGCGAGTGGCCCCCACGCCCTGATTCGTGACGGGGCTGTCCTCA
CCGAGTCGGCGCAGGACGTGCTGACCGAGCTGAACTGGGGCCTGGCCCCTGCCCCAGCGGTGCCCGACCTGCCGCCCGAG
CAAGCGCGGGTGCTGCGGGCGCTGCAAACCCCGGCCACATTGGACGACCTTGCCGCCACAACTGGCCTGAGCATTCCCGA
GTTGCAGACCGCGCTCGTCATGTTGCAGCTTCAGGGGCTGGCCTACGAAGTGGGCGGGCGTTGGAGTCGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(309-362)

DNA recombination-mediator protein A (DNA_processg_A)

(83-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1

Multiple sequence alignment