Detailed information NTG1151698

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M7777_RS00990
• Genome accession: NZ_OV024757
• Coordinates: 184517..185683 (+)
• Length: 388 a.a.
• NCBI ID: WP_010888696.1
• Uniprot ID: Q9RSQ9
• Organism: Deinococcus radiodurans isolate DRR11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 179517..190683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M7777_RS00970	-	179730..180020 (+)	291	WP_027479958.1	hypothetical protein	-
M7777_RS00975	-	180096..180533 (+)	438	WP_034350316.1	hypothetical protein	-
M7777_RS00980	-	180539..181549 (-)	1011	WP_010888693.1	WD repeat-containing protein	-
M7777_RS00985	pnp	181641..183980 (+)	2340	WP_027479957.1	polyribonucleotide nucleotidyltransferase	-
M7777_RS00990	pilD	184517..185683 (+)	1167	WP_010888696.1	A24 family peptidase	Machinery gene
M7777_RS00995	-	185885..186343 (-)	459	WP_010888697.1	divergent PAP2 family protein	-
M7777_RS01000	nusB	186367..186945 (-)	579	WP_010888698.1	transcription antitermination factor NusB	-
M7777_RS01005	-	186942..187349 (-)	408	WP_010888699.1	Asp23/Gls24 family envelope stress response protein	-
M7777_RS01010	ligA	187420..189504 (-)	2085	WP_051618817.1	NAD-dependent DNA ligase LigA	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 41204.65 Da
• Isoelectric Point: 5.8430

>NTDB_id=1151698 M7777_RS00990 WP_010888696.1 184517..185683(+) (pilD) [Deinococcus radiodurans isolate DRR11]
MNVDTLIVLFAGLLGLLVGSFSNVLIWRLPRGENIAFPPSHCPKCDHPLKPTDLVPVFSWLALGGRCRYCRAPINPRYPV
VELLTGVAYAVIAATFPLSTYEAGTLGLMVLFTILLVGSAIDLDTMTLPDELTLPGTLLGVLFGLAGAGLYAQEGQLGLP
NVAQAVEGALMGAGVIVLISVYGSWVLRRFRERQWPEAPIGYQQISLGLLAGAWLGPWWGLGVALLSAAVNVAAKKAVRI
PELLTLGGFLVSLALSSAGTGPGLLDMLRGGLMAAGAVSLVCGVYWWIYWRRNKQAEDDGTDDEQSDPVAMGFGDVKLAA
VIGAFLGWERLLLAVVVAIFAGAVLGLVQLALKQENRVKFGPYLALGAVVALLWGGPLLDWYRGLLGM

Nucleotide

• Length: 1167 bp

>NTDB_id=1151698 M7777_RS00990 WP_010888696.1 184517..185683(+) (pilD) [Deinococcus radiodurans isolate DRR11]
GTGAACGTCGACACCCTCATCGTCCTCTTCGCCGGGCTGCTGGGCCTGCTGGTGGGGTCTTTTTCCAATGTGCTGATCTG
GCGCCTGCCGAGAGGCGAAAACATCGCTTTTCCGCCGAGCCACTGCCCCAAGTGCGACCATCCGCTCAAGCCCACCGACC
TCGTGCCGGTCTTTTCCTGGCTGGCGCTGGGAGGCCGCTGCCGCTACTGCCGCGCACCCATTAACCCGCGCTATCCGGTG
GTGGAACTGCTCACGGGCGTCGCCTACGCCGTCATTGCCGCGACGTTTCCGCTGAGCACCTACGAGGCGGGCACGCTGGG
ACTGATGGTGCTGTTCACGATTTTGCTCGTCGGCAGCGCGATTGACCTCGACACCATGACTCTCCCTGACGAGCTGACGC
TGCCCGGCACCCTGCTCGGCGTGCTGTTCGGGCTCGCGGGCGCGGGGCTCTACGCGCAGGAGGGTCAGTTGGGCCTGCCC
AACGTCGCGCAGGCGGTGGAAGGCGCGCTGATGGGCGCGGGCGTCATCGTCTTGATCAGCGTGTACGGCTCGTGGGTGCT
GCGGCGCTTCCGCGAACGGCAGTGGCCTGAAGCGCCCATCGGTTACCAGCAAATCAGCCTGGGGCTGCTGGCAGGCGCGT
GGCTGGGGCCGTGGTGGGGCCTGGGCGTCGCGCTGCTCTCGGCGGCGGTCAACGTGGCGGCGAAAAAGGCCGTGCGGATT
CCTGAACTGCTCACGCTGGGCGGCTTTCTGGTCAGCCTCGCCCTGAGCAGCGCGGGCACAGGGCCGGGCCTGCTCGACAT
GCTGCGCGGCGGCCTGATGGCGGCGGGCGCCGTCTCGCTCGTCTGCGGCGTGTACTGGTGGATCTACTGGCGGCGCAACA
AGCAGGCTGAAGACGACGGCACCGACGACGAGCAGAGTGACCCGGTGGCGATGGGCTTCGGGGACGTGAAGCTCGCCGCT
GTGATTGGCGCCTTTCTGGGCTGGGAGCGGCTGCTGCTTGCCGTGGTGGTGGCAATTTTTGCGGGCGCCGTGCTGGGGCT
GGTGCAACTCGCGCTCAAGCAGGAAAACCGGGTCAAGTTCGGCCCTTACCTCGCCCTGGGGGCCGTCGTCGCGCTGCTGT
GGGGCGGGCCGCTGCTGGACTGGTACCGGGGGCTGCTAGGGATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (109-229)

• Type IV leader peptidase family (Peptidase_A24) (238-347)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

3D structure

• AlphaFold DB: Q9RSQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1