Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   P3C57_RS02120 Genome accession   NZ_OU532556
Coordinates   420578..421093 (+) Length   171 a.a.
NCBI ID   WP_052780633.1    Uniprot ID   -
Organism   Campylobacter coli isolate     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415578..426093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C57_RS02095 (CC177238_000415) - 416034..416372 (+) 339 WP_002777761.1 hypothetical protein -
  P3C57_RS02100 (CC177238_000416) - 416381..417106 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  P3C57_RS02105 (CC177238_000417) dxr 417103..418179 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  P3C57_RS02110 (CC177238_000418) - 418176..419570 (+) 1395 WP_002793756.1 M99 family carboxypeptidase catalytic domain-containing protein -
  P3C57_RS02115 (CC177238_000419) tsaD 419567..420574 (+) 1008 WP_002780547.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  P3C57_RS02120 (CC177238_000420) ctsG 420578..421093 (+) 516 WP_052780633.1 type II secretion system protein Machinery gene
  P3C57_RS02125 (CC177238_000421) - 421093..422334 (+) 1242 WP_002780551.1 DUF2920 family protein -
  P3C57_RS02130 (CC177238_000422) - 422346..424175 (+) 1830 WP_096788362.1 motility associated factor glycosyltransferase family protein -
  P3C57_RS02135 (CC177238_000423) - 424172..425989 (+) 1818 WP_275549585.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18735.60 Da        Isoelectric Point: 7.8513

>NTDB_id=1151274 P3C57_RS02120 WP_052780633.1 420578..421093(+) (ctsG) [Campylobacter coli isolate]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVNLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1151274 P3C57_RS02120 WP_052780633.1 420578..421093(+) (ctsG) [Campylobacter coli isolate]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCAATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

90.643

100

0.906

Multiple sequence alignment