Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | KKQ79_RS08975 | Genome accession | NZ_OU015319 |
| Coordinates | 1945491..1946141 (+) | Length | 216 a.a. |
| NCBI ID | WP_213189825.1 | Uniprot ID | - |
| Organism | Cloacibacterium caeni isolate Isolate1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1940491..1951141
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KKQ79_RS08960 | - | 1941713..1942516 (-) | 804 | WP_213189823.1 | head GIN domain-containing protein | - |
| KKQ79_RS08965 | - | 1942643..1944761 (+) | 2119 | Protein_1765 | M3 family metallopeptidase | - |
| KKQ79_RS08970 | - | 1944891..1945340 (+) | 450 | WP_213189824.1 | DUF4442 domain-containing protein | - |
| KKQ79_RS08975 | comF | 1945491..1946141 (+) | 651 | WP_213189825.1 | phosphoribosyltransferase family protein | Machinery gene |
| KKQ79_RS08980 | upp | 1946145..1946795 (-) | 651 | WP_213189826.1 | uracil phosphoribosyltransferase | - |
| KKQ79_RS08985 | der | 1946931..1948238 (-) | 1308 | WP_069799639.1 | ribosome biogenesis GTPase Der | - |
| KKQ79_RS08990 | - | 1948491..1948982 (+) | 492 | WP_213189827.1 | heme-binding domain-containing protein | - |
| KKQ79_RS08995 | - | 1948984..1949388 (+) | 405 | WP_213189828.1 | DUF393 domain-containing protein | - |
| KKQ79_RS09000 | - | 1949435..1950061 (+) | 627 | WP_104794412.1 | DUF4290 domain-containing protein | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 25374.49 Da Isoelectric Point: 8.8504
>NTDB_id=1150786 KKQ79_RS08975 WP_213189825.1 1945491..1946141(+) (comF) [Cloacibacterium caeni isolate Isolate1]
MLLDLLFPNRCLHCNTIISKDELVCHVCFPQIKFSHFNFYEENPLKQRCKLLFPVKNAYAVMEFQEEALSQKIIHQLKYR
SQEKVGKIMAEWTLERIYLSEKPDFLITVPLHPKKLKKRGYNQLHLFADILSKNWEIPHHKEALKRNSYQKAQAQKDKSH
RAETKYDFSLTEEISGKHVLLIDDVFTTGNTISAIAWEILKNPRNEVSVLVMAFDS
MLLDLLFPNRCLHCNTIISKDELVCHVCFPQIKFSHFNFYEENPLKQRCKLLFPVKNAYAVMEFQEEALSQKIIHQLKYR
SQEKVGKIMAEWTLERIYLSEKPDFLITVPLHPKKLKKRGYNQLHLFADILSKNWEIPHHKEALKRNSYQKAQAQKDKSH
RAETKYDFSLTEEISGKHVLLIDDVFTTGNTISAIAWEILKNPRNEVSVLVMAFDS
Nucleotide
Download Length: 651 bp
>NTDB_id=1150786 KKQ79_RS08975 WP_213189825.1 1945491..1946141(+) (comF) [Cloacibacterium caeni isolate Isolate1]
ATGCTGCTGGATTTACTGTTCCCGAACAGATGTCTACATTGTAATACCATCATTTCAAAAGACGAACTGGTTTGCCATGT
ATGTTTCCCTCAAATTAAGTTTTCTCATTTTAATTTCTACGAAGAAAATCCTCTGAAACAGAGATGTAAGCTTTTATTTC
CCGTGAAAAATGCTTATGCTGTGATGGAATTTCAAGAAGAAGCATTGAGCCAGAAAATTATTCACCAACTCAAATATCGT
TCTCAGGAAAAAGTTGGAAAAATCATGGCTGAATGGACTTTGGAAAGAATTTACCTTTCAGAAAAACCAGATTTTTTAAT
TACGGTTCCACTTCATCCTAAAAAATTAAAAAAACGAGGTTATAATCAGTTGCATCTTTTTGCCGATATTCTATCTAAAA
ATTGGGAAATTCCTCATCATAAAGAAGCGCTCAAAAGAAATTCTTACCAAAAAGCACAAGCCCAAAAAGACAAATCTCAC
CGCGCCGAAACTAAATATGATTTCTCGCTCACTGAAGAAATTTCTGGAAAACATGTTTTGTTAATAGACGATGTTTTCAC
CACGGGAAATACGATAAGCGCCATCGCTTGGGAAATTTTAAAAAATCCAAGAAATGAAGTGAGTGTTTTGGTGATGGCTT
TTGATTCGTAG
ATGCTGCTGGATTTACTGTTCCCGAACAGATGTCTACATTGTAATACCATCATTTCAAAAGACGAACTGGTTTGCCATGT
ATGTTTCCCTCAAATTAAGTTTTCTCATTTTAATTTCTACGAAGAAAATCCTCTGAAACAGAGATGTAAGCTTTTATTTC
CCGTGAAAAATGCTTATGCTGTGATGGAATTTCAAGAAGAAGCATTGAGCCAGAAAATTATTCACCAACTCAAATATCGT
TCTCAGGAAAAAGTTGGAAAAATCATGGCTGAATGGACTTTGGAAAGAATTTACCTTTCAGAAAAACCAGATTTTTTAAT
TACGGTTCCACTTCATCCTAAAAAATTAAAAAAACGAGGTTATAATCAGTTGCATCTTTTTGCCGATATTCTATCTAAAA
ATTGGGAAATTCCTCATCATAAAGAAGCGCTCAAAAGAAATTCTTACCAAAAAGCACAAGCCCAAAAAGACAAATCTCAC
CGCGCCGAAACTAAATATGATTTCTCGCTCACTGAAGAAATTTCTGGAAAACATGTTTTGTTAATAGACGATGTTTTCAC
CACGGGAAATACGATAAGCGCCATCGCTTGGGAAATTTTAAAAAATCCAAGAAATGAAGTGAGTGTTTTGGTGATGGCTT
TTGATTCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.926 |
100 |
0.509 |