Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BTBSAS_RS04010 Genome accession   NZ_LT993737
Coordinates   817555..819933 (+) Length   792 a.a.
NCBI ID   WP_069118848.1    Uniprot ID   -
Organism   Brochothrix thermosphacta isolate CD 337     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 812555..824933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTBSAS_RS03995 (BTCD_0820) - 814129..815271 (+) 1143 WP_069118851.1 cysteine desulfurase family protein -
  BTBSAS_RS04000 (BTCD_0821) mnmA 815287..816405 (+) 1119 WP_069127650.1 tRNA 2-thiouridine(34) synthase MnmA -
  BTBSAS_RS04005 (BTCD_0822) - 816871..817533 (+) 663 WP_069118849.1 tetratricopeptide repeat protein -
  BTBSAS_RS04010 (BTCD_0823) recD2 817555..819933 (+) 2379 WP_069118848.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BTBSAS_RS04015 (BTCD_0824) - 820528..821043 (+) 516 WP_069118847.1 hypothetical protein -
  BTBSAS_RS04020 (BTCD_0825) - 821561..821983 (+) 423 WP_029091221.1 organic hydroperoxide resistance protein -
  BTBSAS_RS04025 (BTCD_0826) - 822012..822446 (+) 435 WP_029091222.1 MarR family winged helix-turn-helix transcriptional regulator -
  BTBSAS_RS04030 (BTCD_0827) - 822439..823095 (+) 657 WP_069118846.1 nitroreductase family protein -
  BTBSAS_RS04035 (BTCD_0828) - 823099..823473 (+) 375 WP_029091224.1 DUF1304 domain-containing protein -
  BTBSAS_RS04040 (BTCD_0829) - 823517..824047 (-) 531 WP_029091225.1 hypothetical protein -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 88566.94 Da        Isoelectric Point: 4.8260

>NTDB_id=1150383 BTBSAS_RS04010 WP_069118848.1 817555..819933(+) (recD2) [Brochothrix thermosphacta isolate CD 337]
MTDTMNTSEGENIPPYVKGNVVTTIFHNATNLFSVLRMEVKESNVEWDDREIVITGYLPELSQEDRYHLEGTVSEHPKYG
RQFQVTTFRKEMPVTKAGVSTYLSGEMFKGVGKKTAERIVDILGNDAILRILQDPTVLDQVPKLTTKLKESLAKTLQENE
GIELVMIKLNEMGFGPQLAMRIFQTYQQKTMEVINENPYQLIHDVTGIGFNRADELGQKIGMGGNHPSRLSAALMFTVDS
ESMQNGHVYMEYDETVLATKRLLLSSNGSSVIAENEISDALQELLQNNELVQEETRIYLPSLYHAEKGVAHHLMRLEKAQ
AKRTTFPKSEFLKALGELEERINVTYAPSQSDAIETALNSSTMILTGGPGTGKTTVIKGIVELFAELNGVSLDPSEYKDG
KTFPVVLAAPTGRAAKRMSESTNLPAMTIHRLLGMTGQENKSEDVDRDIEGQLLIIDETSMVDIWLANQLLRAVPTNMQV
IFVGDKDQLPSVGPGQFLKDILKSEVIPTISLTEIYRQAEGSSIIELAHHVKDGVLPADFTENQSDRSFFRCNTQQLSEV
VGQVVKNAVKKGFTSKDIQVLIPMYRGPAGINKMNEELQEILNPNPEGKRKEITYGDVIYRVGDKVLQLVNQPESNVFNG
DMGTIVSIIYAKETVEKQDTLVIEFDQTEVTYLRGDLNQITHAYCCSVHKAQGSEFPIVILPLLKSYYRMLRRDILYTAM
TRSRQFLIMCGEEDAFAQATVRQSDVARQTSLFERLTRTTAELEPVNEAGEYILTPENIHSIDPMIGMVESP

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=1150383 BTBSAS_RS04010 WP_069118848.1 817555..819933(+) (recD2) [Brochothrix thermosphacta isolate CD 337]
ATGACGGATACAATGAACACATCAGAGGGTGAAAATATACCACCGTATGTTAAAGGCAATGTGGTCACCACCATCTTTCA
TAATGCCACTAACTTGTTTTCTGTGTTGCGTATGGAAGTGAAAGAAAGTAATGTCGAATGGGATGACCGTGAAATTGTCA
TCACCGGTTATCTACCAGAACTTTCACAAGAAGACCGTTATCATTTAGAAGGAACGGTATCAGAACATCCAAAGTATGGA
CGACAGTTTCAGGTCACAACTTTCAGAAAAGAAATGCCTGTTACTAAGGCGGGTGTTTCTACTTATTTATCTGGAGAAAT
GTTCAAAGGTGTCGGTAAAAAGACTGCTGAACGAATTGTCGATATACTAGGTAACGATGCAATTTTACGGATTTTACAAG
ATCCAACTGTGTTAGATCAAGTCCCAAAATTAACAACAAAATTAAAAGAATCATTAGCCAAAACACTTCAAGAAAATGAA
GGCATTGAATTGGTGATGATTAAACTTAATGAAATGGGATTTGGTCCCCAATTAGCGATGCGTATTTTTCAAACATACCA
ACAAAAAACGATGGAAGTTATTAATGAAAATCCGTATCAATTGATTCATGATGTCACAGGTATCGGCTTTAATCGTGCGG
ATGAACTGGGCCAAAAAATTGGTATGGGTGGTAATCATCCTTCTCGTTTAAGTGCAGCACTGATGTTTACGGTTGATTCG
GAAAGTATGCAAAACGGTCATGTTTATATGGAATATGATGAAACGGTATTAGCTACAAAGCGTTTATTATTAAGTAGTAA
TGGCTCTTCTGTCATTGCGGAAAATGAAATTAGTGACGCATTGCAAGAACTATTACAAAATAATGAGCTTGTGCAAGAAG
AGACACGCATCTATTTACCATCGTTGTATCATGCCGAAAAAGGTGTCGCACATCATTTAATGCGACTTGAAAAAGCACAG
GCGAAGCGTACAACTTTTCCGAAGTCAGAGTTTTTAAAAGCGCTTGGTGAATTGGAAGAACGTATTAATGTAACCTATGC
ACCGTCTCAAAGTGATGCGATTGAAACAGCTTTAAATTCGTCAACAATGATTTTAACAGGTGGACCAGGTACAGGTAAAA
CAACTGTTATTAAAGGGATTGTTGAATTGTTTGCTGAATTAAATGGCGTTAGTCTAGATCCAAGTGAATATAAAGATGGA
AAAACATTCCCTGTCGTTTTGGCAGCACCCACGGGACGAGCAGCAAAACGTATGAGTGAATCGACTAATCTACCTGCGAT
GACAATTCATCGTTTATTGGGGATGACAGGTCAAGAAAATAAGTCTGAAGATGTTGATCGTGATATTGAAGGACAATTGC
TTATTATCGATGAAACAAGTATGGTTGATATTTGGCTAGCAAACCAACTGTTGCGAGCTGTGCCAACTAATATGCAGGTT
ATTTTTGTCGGTGATAAAGACCAGTTGCCATCAGTAGGGCCGGGTCAGTTTTTAAAAGATATTTTAAAATCAGAAGTCAT
TCCAACAATTTCGCTAACAGAAATTTATCGACAAGCAGAAGGCTCATCGATTATTGAATTGGCTCACCATGTAAAAGATG
GCGTTTTGCCTGCTGATTTTACTGAAAATCAGTCAGATCGTTCGTTTTTCCGTTGTAATACACAACAGTTGTCAGAAGTA
GTGGGGCAAGTGGTTAAAAATGCCGTGAAAAAAGGTTTTACTTCTAAGGATATTCAAGTGTTGATCCCGATGTATCGTGG
TCCTGCTGGAATTAATAAAATGAATGAAGAGCTGCAGGAAATTTTAAATCCTAACCCTGAGGGTAAGCGGAAAGAAATAA
CCTATGGCGATGTGATTTATCGTGTGGGTGATAAAGTGCTGCAACTTGTTAATCAGCCTGAGAGTAACGTTTTTAATGGT
GATATGGGAACAATTGTATCAATTATCTATGCGAAGGAAACCGTCGAAAAACAAGATACGCTTGTCATTGAATTTGATCA
AACAGAAGTGACATACTTACGCGGTGATTTGAACCAAATTACGCATGCCTATTGTTGCTCTGTGCATAAAGCACAAGGAT
CTGAATTCCCAATTGTTATTTTACCGTTATTAAAAAGTTATTATCGAATGTTACGCCGTGATATTTTATACACAGCGATG
ACTAGAAGTCGGCAATTTTTAATTATGTGTGGCGAAGAAGATGCCTTTGCGCAAGCGACAGTGAGGCAATCAGACGTTGC
GCGACAAACATCGTTATTTGAACGACTTACTCGCACAACTGCAGAGTTAGAACCGGTGAATGAAGCAGGAGAATATATTT
TAACACCTGAAAATATTCATTCAATTGACCCAATGATTGGTATGGTAGAGAGTCCGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.613

97.854

0.544

Multiple sequence alignment