Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | DG169_RS01355 | Genome accession | NZ_LT992492 |
| Coordinates | 273224..273742 (+) | Length | 172 a.a. |
| NCBI ID | WP_000792032.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 4295STDY6534248 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 268224..278742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG169_RS01335 (SAMEA4374368_00255) | - | 268441..270918 (-) | 2478 | WP_000668733.1 | penicillin-binding protein 1A | - |
| DG169_RS01340 (SAMEA4374368_00256) | pilM | 271061..272077 (+) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| DG169_RS01345 (SAMEA4374368_00257) | pilN | 272067..272651 (+) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| DG169_RS01350 (SAMEA4374368_00258) | pilO | 272644..273234 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| DG169_RS01355 (SAMEA4374368_00259) | pilP | 273224..273742 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| DG169_RS01360 (SAMEA4374368_00260) | pilQ | 273768..275483 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| DG169_RS01365 (SAMEA4374368_00261) | aroK | 275670..276194 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| DG169_RS01370 (SAMEA4374368_00262) | aroB | 276222..277307 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19084.25 Da Isoelectric Point: 10.0857
>NTDB_id=1150307 DG169_RS01355 WP_000792032.1 273224..273742(+) (pilP) [Vibrio cholerae strain 4295STDY6534248]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=1150307 DG169_RS01355 WP_000792032.1 273224..273742(+) (pilP) [Vibrio cholerae strain 4295STDY6534248]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilP | Vibrio campbellii strain DS40M4 |
56.395 |
100 |
0.564 |