Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HUW69_RS19775 Genome accession   NZ_LT992490
Coordinates   232147..233007 (-) Length   286 a.a.
NCBI ID   WP_080280999.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227147..238007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS01020 (SAMEA4374365_00214) gspL 227405..228616 (+) 1212 WP_001288743.1 type II secretion system protein GspL -
  HUW69_RS01025 (SAMEA4374365_00215) - 228626..229123 (+) 498 WP_000661344.1 type II secretion system protein M -
  HUW69_RS01030 (SAMEA4374365_00216) - 229125..229883 (+) 759 WP_029627715.1 type II secretion system protein N -
  HUW69_RS01035 (SAMEA4374365_00217) cysQ 229935..230762 (-) 828 WP_016710965.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HUW69_RS01040 (SAMEA4374365_00218) nudE 230785..231333 (-) 549 WP_029627714.1 ADP compounds hydrolase NudE -
  HUW69_RS01045 (SAMEA4374365_00219) nfuA 231472..232059 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HUW69_RS19775 comF 232147..233007 (-) 861 WP_080280999.1 ComF family protein Machinery gene
  HUW69_RS01060 (SAMEA4374365_00221) bioH 232943..233704 (+) 762 WP_032471905.1 pimeloyl-ACP methyl ester esterase BioH -
  HUW69_RS01065 (SAMEA4374365_00222) - 233866..234336 (+) 471 WP_000961393.1 hypothetical protein -
  HUW69_RS01070 (SAMEA4374365_00223) - 234431..236752 (-) 2322 WP_000030094.1 Tex family protein -
  HUW69_RS01075 (SAMEA4374365_00224) greB 236997..237482 (+) 486 WP_029627711.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32542.49 Da        Isoelectric Point: 8.0588

>NTDB_id=1150293 HUW69_RS19775 WP_080280999.1 232147..233007(-) (comF) [Vibrio cholerae strain 4295STDY6534200]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSTNWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1150293 HUW69_RS19775 WP_080280999.1 232147..233007(-) (comF) [Vibrio cholerae strain 4295STDY6534200]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTACCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATACACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.601

100

0.986
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment