Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   DYY98_RS02865 Genome accession   NZ_LT992436
Coordinates   583680..584750 (-) Length   356 a.a.
NCBI ID   WP_000776409.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-REV     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578680..589750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS02825 gcvPA 578857..580203 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DYY98_RS02830 gcvT 580223..581314 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  DYY98_RS02835 - 581473..581997 (-) 525 WP_001015120.1 shikimate kinase -
  DYY98_RS02840 - 581987..582133 (-) 147 WP_001789879.1 hypothetical protein -
  DYY98_RS02845 comGF 582230..582727 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  DYY98_RS02850 comGE 582645..582944 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DYY98_RS02855 comGD 582931..583377 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  DYY98_RS02860 comGC 583355..583666 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  DYY98_RS02865 comGB 583680..584750 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  DYY98_RS02870 comGA 584722..585696 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DYY98_RS02875 - 585748..586371 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  DYY98_RS02880 - 586368..586697 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DYY98_RS02885 - 586697..587683 (-) 987 WP_000161307.1 ROK family glucokinase -
  DYY98_RS02890 - 587680..587883 (-) 204 WP_000087561.1 YqgQ family protein -
  DYY98_RS02895 - 587864..589327 (-) 1464 WP_001017870.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41536.00 Da        Isoelectric Point: 10.1113

>NTDB_id=1149236 DYY98_RS02865 WP_000776409.1 583680..584750(-) (comGB) [Staphylococcus aureus isolate 1549-REV]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGITILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNFTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVRQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1149236 DYY98_RS02865 WP_000776409.1 583680..584750(-) (comGB) [Staphylococcus aureus isolate 1549-REV]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCATCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTCTCTATTTTTA
TTGCTATGATTATAATATTAAACTTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACTAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGCTATATTCGCAAATATTAGTGAGGCAAATAGAGGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.876

100

0.989
  comGB Staphylococcus aureus N315

98.876

100

0.989

Multiple sequence alignment