Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DG022_RS10695 Genome accession   NZ_LT963436
Coordinates   2182602..2182850 (-) Length   82 a.a.
NCBI ID   WP_047502888.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2177602..2187850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG022_RS10680 - 2179192..2180256 (+) 1065 WP_069822594.1 alcohol dehydrogenase catalytic domain-containing protein -
  DG022_RS10685 - 2180285..2181526 (+) 1242 WP_011303811.1 MFS transporter -
  DG022_RS10690 - 2181566..2182348 (+) 783 WP_002484122.1 DeoR/GlpR family DNA-binding transcription regulator -
  DG022_RS10695 rcrQ 2182602..2182850 (-) 249 WP_047502888.1 hypothetical protein Regulator
  DG022_RS10700 - 2183069..2183920 (-) 852 WP_231912197.1 sugar kinase -
  DG022_RS10705 - 2183924..2184477 (-) 554 Protein_2097 2-dehydro-3-deoxyphosphogluconate aldolase -
  DG022_RS10710 - 2184679..2185623 (+) 945 WP_069822596.1 LacI family DNA-binding transcriptional regulator -
  DG022_RS10715 cidR 2186470..2187345 (-) 876 WP_002484126.1 cidABC operon transcriptional activator CidR -

Sequence

Protein


Download         Length: 82 a.a.        Molecular weight: 9527.83 Da        Isoelectric Point: 6.0673

>NTDB_id=1148922 DG022_RS10695 WP_047502888.1 2182602..2182850(-) (rcrQ) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MFSTSALDIETENKIQKAFKKLSEHRTSLIIAHRLSTIKDVDRIIFIKDGQILEEGSHDVLMQHDGQYKQLYLSQFSDVE
TF

Nucleotide


Download         Length: 249 bp        

>NTDB_id=1148922 DG022_RS10695 WP_047502888.1 2182602..2182850(-) (rcrQ) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
TTGTTTTCGACGAGTGCGCTAGATATTGAAACAGAAAATAAAATTCAAAAAGCGTTTAAAAAACTTTCAGAACACAGAAC
GTCTTTAATTATTGCACATCGATTATCGACGATTAAAGATGTCGACCGTATTATCTTTATTAAAGATGGTCAAATTTTAG
AAGAAGGAAGTCATGATGTATTAATGCAGCATGATGGTCAATATAAACAACTATACTTATCTCAATTCTCAGATGTTGAA
ACGTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.632

92.683

0.488

Multiple sequence alignment