Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LSAJ54_RS02610 Genome accession   NZ_LT960790
Coordinates   529169..529864 (+) Length   231 a.a.
NCBI ID   WP_147658291.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J54     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 524169..534864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS02590 (LSAJ54_0512) rny 524297..525862 (+) 1566 WP_056948843.1 ribonuclease Y -
  LSAJ54_RS02595 (LSAJ54_0513) - 526015..527103 (+) 1089 WP_056948881.1 glycosyltransferase family 4 protein -
  LSAJ54_RS02600 (LSAJ54_0514) - 527129..527794 (-) 666 WP_056948841.1 YigZ family protein -
  LSAJ54_RS02605 (LSAJ54_0515) comFA 527856..529193 (+) 1338 WP_099947263.1 DEAD/DEAH box helicase Machinery gene
  LSAJ54_RS02610 (LSAJ54_0516) comFC 529169..529864 (+) 696 WP_147658291.1 ComF family protein Machinery gene
  LSAJ54_RS02615 (LSAJ54_0517) hpf 529991..530536 (+) 546 WP_056948836.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LSAJ54_RS02620 (LSAJ54_0518) secA 530785..533148 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  LSAJ54_RS02625 (LSAJ54_0519) prfB 533218..534334 (+) 1117 WP_099049013.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26933.39 Da        Isoelectric Point: 9.4488

>NTDB_id=1148497 LSAJ54_RS02610 WP_147658291.1 529169..529864(+) (comFC) [Latilactobacillus sakei strain J54]
MAITINCLMCQNVIIEKPSIKQLLQLKPLLKPHICQICLQQFEPISGNQCSDCSRPLLTGILCSDCQHWRQLYPQQHFKN
QALFTYNRAMQLYFQRYKGQGDYQLRLLFERDIQTRFPVKPNVAYVPIPSDEQHQQARGFNPVQGLFENCFPLMSLLKKR
PTEKGQAQKNRAERLASPQFFELIPQKLPDKLQSITILDDIYTTGRTLWHAQQCLRARYPQITINAITLAR

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1148497 LSAJ54_RS02610 WP_147658291.1 529169..529864(+) (comFC) [Latilactobacillus sakei strain J54]
ATGGCGATTACAATCAACTGTTTAATGTGTCAAAATGTCATTATTGAAAAGCCAAGTATTAAACAACTGCTACAACTAAA
ACCACTACTTAAACCGCATATCTGTCAAATTTGTTTACAGCAGTTTGAACCTATCAGTGGCAACCAGTGTTCGGATTGTA
GTCGGCCACTATTGACGGGCATTTTATGTTCTGATTGTCAGCATTGGCGACAACTTTACCCCCAACAGCATTTTAAAAAT
CAAGCATTGTTTACTTATAATCGGGCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGATTATCAATTACGGTT
ACTATTTGAACGGGACATTCAAACGCGGTTTCCAGTAAAGCCCAATGTAGCTTACGTGCCGATCCCATCCGATGAGCAAC
ATCAACAAGCACGCGGTTTTAATCCAGTCCAAGGCTTATTCGAAAATTGTTTTCCGCTAATGTCACTCTTGAAAAAGCGA
CCAACGGAAAAGGGGCAAGCGCAAAAAAATCGTGCAGAACGACTCGCAAGTCCGCAATTTTTTGAATTAATACCACAAAA
GTTACCTGATAAGCTACAGTCGATAACGATTCTAGATGATATTTACACGACCGGTCGAACGTTGTGGCATGCTCAGCAAT
GTCTGCGTGCTCGTTATCCGCAAATTACAATTAATGCAATTACTTTGGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

91.549

61.472

0.563

Multiple sequence alignment