Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LSAJ64_RS09365 Genome accession   NZ_LT960781
Coordinates   1823005..1823565 (-) Length   186 a.a.
NCBI ID   WP_101378062.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J64     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1818005..1828565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ64_RS09335 (LSAJ64_1883) rplA 1819240..1819929 (-) 690 WP_101378060.1 50S ribosomal protein L1 -
  LSAJ64_RS09340 (LSAJ64_1884) rplK 1820028..1820453 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  LSAJ64_RS09345 (LSAJ64_1885) - 1820579..1821436 (-) 858 WP_101378061.1 alpha/beta fold hydrolase -
  LSAJ64_RS09350 (LSAJ64_1886) nusG 1821895..1822443 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  LSAJ64_RS09355 (LSAJ64_1887) secE 1822541..1822720 (-) 180 WP_011375365.1 preprotein translocase subunit SecE -
  LSAJ64_RS09360 (LSAJ64_1888) rpmG 1822730..1822879 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  LSAJ64_RS09365 (LSAJ64_1889) sigH 1823005..1823565 (-) 561 WP_101378062.1 sigma-70 family RNA polymerase sigma factor Regulator
  LSAJ64_RS09370 (LSAJ64_1890) - 1823643..1824176 (-) 534 WP_016265667.1 NYN domain-containing protein -
  LSAJ64_RS09375 (LSAJ64_1891) rlmB 1824180..1825067 (-) 888 WP_082267747.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LSAJ64_RS09380 (LSAJ64_1892) - 1825054..1825461 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  LSAJ64_RS09385 (LSAJ64_1893) cysS 1825458..1826864 (-) 1407 WP_101378063.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22107.31 Da        Isoelectric Point: 7.4752

>NTDB_id=1148409 LSAJ64_RS09365 WP_101378062.1 1823005..1823565(-) (sigH) [Latilactobacillus sakei strain J64]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSMDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1148409 LSAJ64_RS09365 WP_101378062.1 1823005..1823565(-) (sigH) [Latilactobacillus sakei strain J64]
ATGGAACAAACAAAGCGCGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGACCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACAGGGCAGCTTTCAATGGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.237

100

0.962

Multiple sequence alignment