Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V529_RS07715 Genome accession   NZ_CP006890
Coordinates   1629545..1630324 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis SQR9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624545..1635324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS07695 (V529_15530) trmFO 1625232..1626539 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V529_RS07700 (V529_15540) xerC 1626609..1627526 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  V529_RS07705 (V529_15550) hslV 1627542..1628087 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  V529_RS07710 (V529_15560) hslU 1628104..1629507 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  V529_RS07715 (V529_15570) codY 1629545..1630324 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V529_RS07720 (V529_15580) flgB 1630678..1631067 (+) 390 WP_038458008.1 flagellar basal body rod protein FlgB -
  V529_RS07725 (V529_15590) flgC 1631067..1631519 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  V529_RS07730 (V529_15600) fliE 1631530..1631850 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  V529_RS07735 (V529_15610) fliF 1631893..1633503 (+) 1611 WP_038458010.1 flagellar basal-body MS-ring/collar protein FliF -
  V529_RS07740 (V529_15620) fliG 1633516..1634532 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  V529_RS07745 (V529_15630) fliH 1634525..1635280 (+) 756 WP_038458013.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=114835 V529_RS07715 WP_003154263.1 1629545..1630324(+) (codY) [Bacillus velezensis SQR9]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=114835 V529_RS07715 WP_003154263.1 1629545..1630324(+) (codY) [Bacillus velezensis SQR9]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment