Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   FY484_RS13095 Genome accession   NZ_LT906614
Coordinates   2802942..2803460 (-) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae O1 biovar El Tor str. N16961     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2797942..2808460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY484_RS13080 aroB 2799377..2800462 (-) 1086 WP_000439805.1 3-dehydroquinate synthase -
  FY484_RS13085 aroK 2800490..2801014 (-) 525 WP_000818616.1 shikimate kinase AroK -
  FY484_RS13090 pilQ 2801201..2802916 (-) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  FY484_RS13095 pilP 2802942..2803460 (-) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  FY484_RS13100 pilO 2803450..2804040 (-) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  FY484_RS13105 pilN 2804033..2804617 (-) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  FY484_RS13110 pilM 2804607..2805623 (-) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  FY484_RS13115 - 2805766..2808243 (+) 2478 WP_000668733.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=1148167 FY484_RS13095 WP_000792032.1 2802942..2803460(-) (pilP) [Vibrio cholerae O1 biovar El Tor str. N16961]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1148167 FY484_RS13095 WP_000792032.1 2802942..2803460(-) (pilP) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564

Multiple sequence alignment