Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CKV81_RS09890 Genome accession   NZ_LT906465
Coordinates   2066371..2067021 (-) Length   216 a.a.
NCBI ID   WP_095072919.1    Uniprot ID   A0A239XPG0
Organism   Chryseobacterium taklimakanense strain NCTC13490     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2061371..2072021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV81_RS09860 (SAMEA4412677_02007) - 2061971..2062612 (-) 642 WP_095072905.1 DUF4290 domain-containing protein -
  CKV81_RS09865 (SAMEA4412677_02008) - 2062649..2063059 (-) 411 WP_095072907.1 thiol-disulfide oxidoreductase DCC family protein -
  CKV81_RS09870 (SAMEA4412677_02009) - 2063056..2063538 (-) 483 WP_095072909.1 heme-binding domain-containing protein -
  CKV81_RS09875 (SAMEA4412677_02010) der 2063714..2065024 (+) 1311 WP_095072912.1 ribosome biogenesis GTPase Der -
  CKV81_RS09880 (SAMEA4412677_02011) - 2065130..2065477 (+) 348 WP_095072914.1 four helix bundle protein -
  CKV81_RS09885 (SAMEA4412677_02012) upp 2065570..2066220 (+) 651 WP_095072916.1 uracil phosphoribosyltransferase -
  CKV81_RS13425 (SAMEA4412677_02013) - 2066225..2066374 (+) 150 WP_169842772.1 hypothetical protein -
  CKV81_RS09890 (SAMEA4412677_02014) comF 2066371..2067021 (-) 651 WP_095072919.1 ComF family protein Machinery gene
  CKV81_RS09895 (SAMEA4412677_02015) - 2067068..2068537 (-) 1470 WP_095072921.1 helix-turn-helix domain-containing protein -
  CKV81_RS09900 (SAMEA4412677_02016) aceB 2068812..2070389 (+) 1578 WP_095072922.1 malate synthase A -
  CKV81_RS09905 (SAMEA4412677_02017) aceA 2070560..2071846 (+) 1287 WP_185116896.1 isocitrate lyase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25105.96 Da        Isoelectric Point: 7.4834

>NTDB_id=1147769 CKV81_RS09890 WP_095072919.1 2066371..2067021(-) (comF) [Chryseobacterium taklimakanense strain NCTC13490]
MFLDFLFPNRCLNCNSIIDAENLVCEACTDQIHFTHHIFGEENELEKRCRLLFPVENAYALMQFGEESLSRKIVHDLKYK
SREKVGKILAEWTAKRLDFKNEKPDLLVSVPLHPKKLKERGYNQLHLFTETLSEHFEIPYDHTLIKRNFYKKAQALKDKA
HRSATEKLFSISKPVQNQHVLLIDDVFTTGNTMSSVAWEILKEGNNKVSVLVMAVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1147769 CKV81_RS09890 WP_095072919.1 2066371..2067021(-) (comF) [Chryseobacterium taklimakanense strain NCTC13490]
ATGTTTCTGGATTTTCTTTTTCCGAACCGGTGCCTGAACTGCAACAGCATTATTGATGCGGAAAATTTGGTTTGTGAAGC
GTGCACGGATCAGATTCATTTCACCCACCATATTTTTGGAGAAGAAAATGAACTGGAAAAGCGGTGCAGATTACTTTTCC
CTGTTGAAAATGCTTATGCATTGATGCAGTTTGGGGAGGAAAGCCTTTCCCGAAAAATTGTGCATGATCTGAAATATAAA
AGCCGTGAAAAAGTTGGGAAAATTCTGGCAGAATGGACAGCAAAACGTCTTGATTTTAAAAATGAAAAGCCTGATTTATT
GGTGTCTGTTCCGCTGCATCCGAAGAAGCTGAAAGAGCGCGGGTATAATCAGCTGCATCTGTTTACGGAAACACTTTCAG
AACATTTTGAAATTCCGTACGATCACACTTTAATCAAAAGAAATTTCTATAAAAAAGCGCAGGCACTGAAGGACAAAGCA
CACCGTTCGGCAACGGAAAAACTTTTTTCAATTTCAAAACCAGTTCAAAATCAACACGTTTTGCTTATTGATGATGTTTT
CACCACCGGAAATACGATGAGTTCTGTGGCGTGGGAAATTTTGAAAGAAGGAAATAATAAGGTGAGCGTTCTGGTAATGG
CTGTGGATTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239XPG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.315

100

0.523

Multiple sequence alignment