Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V469_RS00580 Genome accession   NZ_CP006883
Coordinates   128937..130451 (-) Length   504 a.a.
NCBI ID   WP_016352355.1    Uniprot ID   -
Organism   Aeromonas hydrophila J-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 123937..135451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V469_RS00555 (V469_00570) - 125059..125694 (-) 636 WP_011707867.1 nicotinamidase -
  V469_RS00560 (V469_00575) - 125770..126420 (+) 651 WP_011707866.1 NUDIX hydrolase -
  V469_RS00565 (V469_00580) - 126521..127006 (+) 486 WP_016352358.1 DUF523 domain-containing protein -
  V469_RS00570 (V469_00585) - 126952..127908 (-) 957 WP_016352357.1 acyltransferase -
  V469_RS00575 (V469_00590) - 127902..128816 (-) 915 WP_016352356.1 acyltransferase -
  V469_RS00580 (V469_00595) comM 128937..130451 (-) 1515 WP_016352355.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V469_RS00585 (V469_00600) ilvG 130835..132481 (+) 1647 WP_016352354.1 acetolactate synthase 2 catalytic subunit -
  V469_RS00590 (V469_00605) ilvM 132478..132729 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  V469_RS00595 (V469_00610) - 132742..133686 (+) 945 WP_016352353.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54667.58 Da        Isoelectric Point: 7.4494

>NTDB_id=114776 V469_RS00580 WP_016352355.1 128937..130451(-) (comM) [Aeromonas hydrophila J-1]
MSLAVVYSRASLGVAAPQVTVEVHLSSGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRQAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=114776 V469_RS00580 WP_016352355.1 128937..130451(-) (comM) [Aeromonas hydrophila J-1]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTGGGTGTCGCGGCCCCGCAAGTGACGGTGGAGGTGCACCTCTCCAG
CGGTTTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCCTCCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAGCTGGCCCTTACCGGCGAGATCCGTCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAAGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAGCTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
ACCGGACCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCACCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCCTGCCCGGCATCTTGCCACCGCTGAGCGAACAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGGGCCGGTCACTGGCACCACAGGCCCTATCG
TACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGTGGTAGTCACCCGCGGCCCGGCGAAATATCGTTGGCCC
ACAACGGCGTACTGTTTCTGGATGAACTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAAACC
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCTTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTTGATCGCTTCGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCTGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGAACGGGTGCTGGGAGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTAAACAACCT
GCTTGATAGCCGTGAAATCGAAGAGATTTGCCGTTTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATAGCCGATCTAGCAGGACGGCAGGCCATC
GAGAAGGAACACCTGATCGAGGCGCTCGGCTACCGGGCCATGGATCGGCTGTTGTCACGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.595

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.595

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment