Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CKV93_RS05075 Genome accession   NZ_LT906464
Coordinates   1057137..1059533 (+) Length   798 a.a.
NCBI ID   WP_095116668.1    Uniprot ID   A0A240C2V9
Organism   Staphylococcus muscae strain NCTC13833     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052137..1064533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV93_RS05055 (SAMEA4412661_01033) - 1052860..1053873 (-) 1014 WP_095116660.1 LLM class flavin-dependent oxidoreductase -
  CKV93_RS05060 (SAMEA4412661_01034) - 1054080..1055228 (+) 1149 WP_095116662.1 cysteine desulfurase family protein -
  CKV93_RS05065 (SAMEA4412661_01035) mnmA 1055225..1056337 (+) 1113 WP_095116664.1 tRNA 2-thiouridine(34) synthase MnmA -
  CKV93_RS05070 (SAMEA4412661_01036) - 1056463..1057134 (+) 672 WP_095116666.1 tetratricopeptide repeat protein -
  CKV93_RS05075 (SAMEA4412661_01037) recD2 1057137..1059533 (+) 2397 WP_095116668.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CKV93_RS05080 (SAMEA4412661_01039) alaS 1059781..1062411 (+) 2631 WP_095116670.1 alanine--tRNA ligase -
  CKV93_RS05085 (SAMEA4412661_01040) - 1062477..1062752 (+) 276 WP_095116672.1 IreB family regulatory phosphoprotein -
  CKV93_RS05090 (SAMEA4412661_01041) ruvX 1062745..1063173 (+) 429 WP_095116674.1 Holliday junction resolvase RuvX -
  CKV93_RS05095 (SAMEA4412661_01042) - 1063187..1063507 (+) 321 WP_095116676.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90062.33 Da        Isoelectric Point: 4.5356

>NTDB_id=1147742 CKV93_RS05075 WP_095116668.1 1057137..1059533(+) (recD2) [Staphylococcus muscae strain NCTC13833]
MENPTLLDSTYVKGEVVLILFQNTDNFYTVLKVEVDDTNGDFEDEATVVGYFPDIVENETYLFKGYVVQHARYGQQLKAE
TFQKELPQTKDAVIAYLSSSLFKGIGVKTAESIVETLGEDAIRQILNDASCLSRVPRLSKDKQKQIAQQVYQNQESEQIM
IRLNELGFGSKLAMDIYKFYQADTLKILDQNPYQLVYDIKGVGFQKADQLAQQLGIHPLHQDRLRAGILYVVEETCLKNG
HTYLPADALIHAAIELLTKNQTDTIDEAPMQECMTQLVEEQKLIAVDDIVAIPSLYYSELKSTQNLFKIENHKQALTKFD
LSDIQLHIGEIEEMNEVSYATSQKDALECALQNKVMLLTGGPGTGKTTVIKGIVQLYAEMHGFSLDYDDYDEGEAFPVVL
AAPTGRASKRLHESTGLEAMTIHRLIGWNQETKPDDLLEHEIDARLIIIDEMSMVDTWLFHQFLNAVPKDAQVVLVGDED
QLPSVGPGQVFKDLIDADVLPRINLTEVYRQQDGSSIIDLAHRIKLGQDVDITKRYHDRSFIACQTHQIPEIVDKIVSNA
VGKGYTMSDIQVLAPMYRGSAGIQKLNQVLQNILNPKEDEAHREVAFGDVKFRKGDKVLQLVNRPDDNVFNGDIGEIIGI
FWAKENAMNKDVVIVDFEGNEITYMRSDLTELTHAYCTSIHKSQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLV
FLGDAEVFNMGLHTEGQTRLTQLQTFLTMYFKGDSEEETKEANATTFVLTESNMYQVNPMINMGETTPYDFLEIDKGS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1147742 CKV93_RS05075 WP_095116668.1 1057137..1059533(+) (recD2) [Staphylococcus muscae strain NCTC13833]
ATGGAAAACCCAACGCTACTAGATAGTACCTATGTGAAAGGTGAAGTCGTTCTTATCCTTTTTCAAAATACGGACAATTT
TTATACAGTATTAAAAGTTGAAGTTGATGATACAAATGGCGATTTTGAAGACGAAGCAACTGTCGTTGGGTATTTTCCAG
ATATTGTTGAGAATGAAACATATCTTTTTAAAGGCTATGTCGTACAGCATGCACGATATGGCCAACAGCTTAAGGCAGAA
ACATTTCAAAAAGAACTGCCTCAAACGAAAGATGCTGTGATCGCATACCTCTCTAGTTCACTTTTTAAAGGAATCGGTGT
CAAAACGGCAGAATCGATTGTTGAAACACTAGGTGAAGATGCCATTCGTCAAATTTTAAATGATGCATCTTGTCTGTCTC
GTGTCCCACGCTTATCAAAAGACAAGCAGAAGCAAATCGCACAACAAGTTTATCAAAATCAGGAAAGTGAACAAATTATG
ATTCGTTTGAACGAACTCGGTTTTGGATCAAAACTTGCGATGGATATTTACAAATTCTATCAAGCAGATACATTAAAAAT
TTTAGATCAGAATCCATATCAGCTTGTCTATGATATTAAAGGGGTTGGTTTTCAAAAAGCTGACCAATTAGCGCAACAAT
TAGGAATTCATCCTTTACATCAAGATCGTCTGCGTGCTGGCATTCTTTATGTAGTAGAAGAAACATGTCTTAAAAATGGT
CATACATATTTACCAGCTGATGCTTTGATTCATGCGGCGATTGAATTACTTACTAAAAACCAGACAGACACAATCGATGA
AGCACCTATGCAAGAGTGTATGACACAACTTGTTGAAGAACAGAAATTAATTGCAGTAGATGATATCGTTGCAATTCCCA
GTCTTTATTATTCGGAACTGAAAAGCACGCAAAATTTATTTAAAATTGAAAATCATAAACAAGCACTGACAAAATTTGAT
TTGTCTGATATTCAACTACATATTGGTGAAATTGAAGAAATGAATGAAGTGAGTTATGCAACATCTCAAAAAGATGCATT
AGAATGTGCGCTACAAAATAAAGTAATGCTATTAACAGGTGGGCCAGGAACAGGTAAAACAACCGTAATCAAAGGCATTG
TCCAACTATATGCTGAAATGCATGGTTTCTCACTTGATTATGATGATTATGACGAAGGAGAAGCTTTCCCAGTTGTGCTG
GCTGCACCAACAGGTCGTGCATCCAAGCGTCTTCATGAGTCAACGGGACTTGAAGCAATGACGATACATCGACTAATTGG
CTGGAATCAAGAGACAAAACCAGATGACTTGTTGGAACATGAAATTGATGCACGCTTAATTATAATAGATGAGATGTCGA
TGGTAGATACATGGTTGTTTCATCAATTTTTGAATGCCGTTCCTAAAGATGCACAAGTTGTACTAGTGGGTGATGAAGAC
CAATTGCCATCGGTAGGGCCGGGTCAAGTATTCAAAGATTTAATTGATGCAGATGTTTTACCGAGAATTAATTTGACTGA
AGTGTACCGTCAACAAGATGGATCGAGTATTATTGATTTAGCGCATCGCATTAAGTTGGGACAAGATGTTGATATTACGA
AAAGATATCACGACCGTTCTTTTATAGCATGTCAGACACATCAAATTCCGGAGATTGTTGATAAAATTGTGTCAAATGCA
GTGGGTAAGGGATATACGATGTCTGATATTCAAGTACTCGCACCGATGTATCGTGGGAGTGCAGGAATTCAAAAATTAAA
TCAAGTACTTCAAAATATACTAAACCCTAAAGAAGATGAAGCGCATCGTGAAGTGGCATTTGGTGATGTGAAATTCCGCA
AAGGTGACAAAGTCTTACAATTGGTTAATCGACCAGACGACAATGTTTTTAATGGAGATATTGGAGAGATTATCGGTATC
TTTTGGGCAAAAGAGAATGCGATGAATAAAGATGTTGTTATCGTTGACTTTGAAGGCAATGAGATTACGTATATGCGTTC
GGATCTTACCGAACTGACACACGCTTATTGTACTTCTATTCATAAGTCACAAGGATCAGAGTTCCCGATTGTGATTATGC
CGATAGTTAAACAGTATTATCGCATGCTTCAGAAGCCAATATTGTATACAGGACTGACACGTGCAAAACAATCGCTCGTC
TTTCTAGGCGATGCAGAAGTGTTTAATATGGGATTACATACTGAAGGACAGACACGTTTAACACAATTACAAACCTTTTT
AACAATGTATTTTAAAGGAGATTCGGAAGAAGAGACGAAAGAAGCAAATGCGACAACATTTGTCTTAACTGAGTCGAATA
TGTATCAAGTCAATCCAATGATTAATATGGGTGAAACAACACCTTATGATTTTTTAGAAATTGACAAAGGTTCATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-657)

AAA domain (AAA_30)

(339-546)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240C2V9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.866

99.499

0.486

Multiple sequence alignment