Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CKV64_RS05525 Genome accession   NZ_LT906462
Coordinates   1108449..1110836 (+) Length   795 a.a.
NCBI ID   WP_095087652.1    Uniprot ID   A0A239Z3T6
Organism   Mammaliicoccus stepanovicii strain NCTC13839     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103449..1115836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV64_RS05505 (SAMEA4384403_01138) sal 1103726..1105351 (+) 1626 WP_095087646.1 Sal family ABC-F type ribosomal protection protein -
  CKV64_RS05510 (SAMEA4384403_01139) - 1105411..1106559 (+) 1149 WP_095087648.1 cysteine desulfurase family protein -
  CKV64_RS05515 (SAMEA4384403_01140) mnmA 1106552..1107661 (+) 1110 WP_095087649.1 tRNA 2-thiouridine(34) synthase MnmA -
  CKV64_RS05520 (SAMEA4384403_01141) - 1107781..1108446 (+) 666 WP_095087650.1 tetratricopeptide repeat protein -
  CKV64_RS05525 (SAMEA4384403_01142) recD2 1108449..1110836 (+) 2388 WP_095087652.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CKV64_RS05530 (SAMEA4384403_01144) alaS 1111088..1113718 (+) 2631 WP_095087654.1 alanine--tRNA ligase -
  CKV64_RS05535 (SAMEA4384403_01145) - 1113786..1114061 (+) 276 WP_095087655.1 IreB family regulatory phosphoprotein -
  CKV64_RS05540 (SAMEA4384403_01146) ruvX 1114048..1114479 (+) 432 WP_095087657.1 Holliday junction resolvase RuvX -
  CKV64_RS05545 (SAMEA4384403_01147) - 1114495..1114800 (+) 306 WP_095087658.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 90167.34 Da        Isoelectric Point: 4.6512

>NTDB_id=1147685 CKV64_RS05525 WP_095087652.1 1108449..1110836(+) (recD2) [Mammaliicoccus stepanovicii strain NCTC13839]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVVKVDVSDSNEDFDQEVSIVGYLPQIVEGETYLFKGKVIEHSKYGKQLQAQ
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVNKLGEDALNKIIEDPDVLREIPKLNKQKRDTIAESIRENQAIERIM
IKLNDLGFGPKLAMSIYQVYKEETINVIQETPYRLVMDVNGIGFQKADQIAEQVGIMKDHKARIVAGISYYLDQQSLQNG
HTYLPIDILCNGAYDLLNHNQPEVVTKDQINESIIEMNEEKRIIIEDNNCFLPSLYYSEAKSVQIIHRLYQHQDELKTIE
KSDLQLHIGQIEDMNEVSYAEGQKAALETAINNKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLDYDDYQEGTDFPVVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGMPVSINEKHHDRSFISCTTNQIGTVVEKVVQGA
VNKGYNMQDIQVLAPIYRGQAGINNLNLILQDILNPKDEETRYLAYGDIEYREKDKVLQLINRPDDNVFNGDIGIVTGVY
KAEENALGKDVVIVDYEGNEITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVKQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGITTLGHGRMTSFDTKLKMYFNYEDNDGDAKDEAHITKNIILTEDNMFEVDPMINMQNKTPYDFMN

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=1147685 CKV64_RS05525 WP_095087652.1 1108449..1110836(+) (recD2) [Mammaliicoccus stepanovicii strain NCTC13839]
TTGGAAAATTTATCTTTATTTGATCTCTCACATGTCAAAGGTGAAGTGATTAGAATCTTATTTCAAAATAGCGATAATTA
TTATACCGTTGTAAAAGTAGATGTGTCGGATTCAAATGAAGATTTTGACCAAGAAGTCTCAATTGTTGGCTATCTTCCAC
AAATAGTTGAAGGAGAAACTTATCTATTTAAAGGTAAAGTTATCGAACATTCCAAATACGGAAAACAGCTACAAGCACAA
ACATTTGAAAAAGAATTACCGCAGACGAAGCAAGGCGTCATACATTATCTATCGAGTGACTTATTTAAAGGTATAGGTAA
AAAAACAGCTGAAACAATCGTGAACAAACTTGGAGAAGATGCGCTAAATAAAATAATAGAAGATCCTGATGTGTTAAGAG
AAATACCTAAACTTAACAAACAAAAGCGTGATACAATCGCCGAATCTATAAGAGAAAATCAAGCCATAGAGAGAATCATG
ATTAAGTTAAATGATTTGGGTTTTGGACCTAAGTTAGCGATGTCCATTTATCAAGTATATAAGGAAGAAACGATAAATGT
TATTCAAGAGACGCCATATCGTTTAGTTATGGATGTGAATGGAATTGGTTTTCAAAAAGCAGATCAGATTGCTGAACAAG
TGGGTATAATGAAAGACCATAAAGCGAGAATAGTTGCAGGTATCAGTTATTATTTAGATCAACAATCTCTGCAAAATGGT
CATACTTATTTACCTATTGATATTTTATGTAATGGTGCATATGACTTATTAAATCATAATCAGCCTGAAGTGGTAACGAA
AGACCAAATCAATGAATCTATCATAGAAATGAACGAAGAGAAACGTATTATTATCGAAGACAACAATTGTTTCCTTCCTT
CATTATATTATTCAGAAGCGAAGAGTGTTCAAATCATTCATAGACTTTATCAACATCAAGATGAATTAAAGACGATTGAA
AAAAGCGATTTACAACTTCATATTGGTCAAATAGAAGATATGAATGAAGTATCGTATGCAGAAGGTCAAAAGGCAGCACT
AGAAACAGCTATAAATAATAAGATGATGCTTTTAACAGGTGGACCAGGTACAGGTAAGACAACGGTTATTAGAGGAATAT
GTGAATTGTATTCAGAAATTCATGGTGTCAGCTTAGATTATGATGACTATCAAGAAGGTACTGATTTTCCTGTTGTATTG
GCTGCGCCTACTGGTCGAGCCGCAAAACGTTTAAGTGAATCTACAGGACTTGAGGCAATGACAATCCACCGATTAATTGG
TTGGAGTAAAGATACACAACCGGATGACGTACTAGACAATGATATTCATGCACACTTAATTATATTGGATGAAATGTCGA
TGGTTGATACATGGCTCATGTACCAATTTTTAAGAGCAGTTCCTGATTATGCGCAAATTATTTTTGTTGGTGATGAAGAT
CAGCTACCTTCTGTTGGTCCTGGACAAATTTTCAAGGATTTAATAGACTCAAAAGTTATACCGAGAGTAAATTTAACTGA
AGTATATAGACAACAAGAAGGTTCATCAATCATAGATTTAGCGCACAAAATAAAGAATGGCATGCCAGTTTCGATAAATG
AAAAGCATCATGATCGTTCTTTCATAAGTTGTACGACGAATCAAATTGGTACAGTTGTCGAAAAAGTTGTTCAAGGCGCA
GTAAATAAAGGTTACAATATGCAAGACATACAAGTTTTGGCACCCATATATAGAGGTCAAGCAGGTATAAATAATTTAAA
CTTGATTTTGCAAGATATTTTAAACCCTAAAGATGAAGAAACAAGATATTTAGCTTATGGAGATATTGAATATAGAGAGA
AAGATAAAGTGCTGCAACTCATAAATAGACCTGATGACAATGTATTTAATGGAGATATTGGTATCGTAACGGGTGTATAC
AAAGCAGAAGAGAATGCACTTGGTAAAGATGTTGTCATCGTTGATTATGAAGGTAATGAAATAACATATACGAAACAAGA
TTTATCAGAAATCACTCATGCTTATTGTTGTTCTATTCATAAATCTCAAGGTTCTGAGTTTCCAATCGTTATTATGCCGA
TTGTAAAACAATATTTTAGAATGCTCCAAAAGAATATCCTGTATACAGGATTAACAAGAGCTAAACAATCTCTAGTCGTT
TGTGGTGAAGAACAAGCTTTTAATCAAGGGATTACAACATTAGGCCACGGAAGAATGACTTCATTTGATACTAAATTAAA
AATGTATTTTAATTATGAGGATAATGATGGAGATGCAAAGGATGAGGCTCATATCACTAAAAACATTATCTTAACAGAAG
ATAATATGTTTGAAGTAGATCCAATGATTAATATGCAAAATAAAACACCTTATGACTTTATGAATTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

AAA domain (AAA_30)

(339-546)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239Z3T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.251

100

0.504

Multiple sequence alignment