Detailed information NTG1147337

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: CKV71_RS06465
• Genome accession: NZ_LT906447
• Coordinates: 1393063..1395471 (+)
• Length: 802 a.a.
• NCBI ID: WP_095104911.1
• Uniprot ID: A0A239U1W1
• Organism: Staphylococcus piscifermentans strain NCTC13836
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1388063..1400471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKV71_RS12430 (SAMEA4384060_01331)	-	1388365..1388538 (+)	174	WP_157738594.1	hypothetical protein	-
CKV71_RS06440 (SAMEA4384060_01332)	-	1388600..1388806 (+)	207	WP_095104901.1	CsbD family protein	-
CKV71_RS06445 (SAMEA4384060_01333)	-	1388850..1389848 (-)	999	WP_095104903.1	LLM class flavin-dependent oxidoreductase	-
CKV71_RS06450 (SAMEA4384060_01334)	-	1390030..1391169 (+)	1140	WP_095104905.1	cysteine desulfurase family protein	-
CKV71_RS06455 (SAMEA4384060_01335)	mnmA	1391172..1392284 (+)	1113	WP_095104907.1	tRNA 2-thiouridine(34) synthase MnmA	-
CKV71_RS06460 (SAMEA4384060_01336)	-	1392391..1393059 (+)	669	WP_095104909.1	tetratricopeptide repeat protein	-
CKV71_RS06465 (SAMEA4384060_01337)	recD2	1393063..1395471 (+)	2409	WP_095104911.1	ATP-dependent RecD-like DNA helicase	Machinery gene
CKV71_RS06470 (SAMEA4384060_01339)	alaS	1395774..1398404 (+)	2631	WP_095104913.1	alanine--tRNA ligase	-
CKV71_RS06475 (SAMEA4384060_01340)	-	1398473..1398736 (+)	264	WP_095104915.1	IreB family regulatory phosphoprotein	-
CKV71_RS06480 (SAMEA4384060_01341)	ruvX	1398740..1399168 (+)	429	WP_095104917.1	Holliday junction resolvase RuvX	-
CKV71_RS06485 (SAMEA4384060_01342)	-	1399191..1399502 (+)	312	WP_095104919.1	DUF1292 domain-containing protein	-
CKV71_RS06490 (SAMEA4384060_01343)	-	1399800..1400441 (+)	642	WP_095104921.1	O-methyltransferase	-

Sequence

Protein

• Length: 802 a.a.
• Molecular weight: 90389.80 Da
• Isoelectric Point: 4.5237

>NTDB_id=1147337 CKV71_RS06465 WP_095104911.1 1393063..1395471(+) (recD2) [Staphylococcus piscifermentans strain NCTC13836]
MSNPTLFDYSMVKGTVEAILFQNKENFYTVLKVDPIETNEEFDSMPTIVGFFPEIAEGDVYTFKGQAVTHPKYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAENIVATLGENAINKILDNEEALAEVPHLSKKKQKQIAEQIYSNQEVEKIM
IRLHDLGFGPKLSMNIYQVYQVETLSEIEKNPYQLVYDVKGVGFNKADTLAKNLGIEYNDPERLKAGLLYTIEEECIKQG
HTYLPKDYVIEASQDTLSQVHSESIDAKLLEEMILQLTEEEKLVEADETLSVPSLYYSEVKSVQNLYRIEAHQTKLETIE
QSDLQMHIGEIEDMNKVNYAASQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPIALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQETKPEDVLENEINAKLIIIDEMSMVDTWLFHQFLNAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITQRFHDRSFIPCSADQIPDVVNKVVTSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKEEDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIQGIFW
AKENELNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMQTYGQVRMTRMAQLLRDYFGTEASSSETEENHSTSTAEQNTKVIELSEATIFKIDPMIGMGDVTPYSFAP
EK

Nucleotide

• Length: 2409 bp

>NTDB_id=1147337 CKV71_RS06465 WP_095104911.1 1393063..1395471(+) (recD2) [Staphylococcus piscifermentans strain NCTC13836]
TTGAGCAACCCTACATTATTTGATTACTCTATGGTCAAAGGTACGGTCGAAGCCATTCTTTTTCAAAATAAAGAAAACTT
CTATACTGTGCTGAAAGTAGATCCTATTGAAACGAATGAAGAATTTGATAGTATGCCGACAATTGTAGGGTTCTTTCCTG
AAATTGCAGAAGGTGATGTGTATACCTTCAAAGGACAAGCGGTTACACACCCGAAGTATGGCAAACAGTTGAAAGCAGAA
ACCTTTGAAAAAGAATTACCGCAAACAAAAGATGCTATTGTCAGTTATTTGTCTAGTGATTTATTTAAAGGTATCGGAAA
GAAAACAGCAGAAAATATTGTCGCTACACTTGGCGAAAACGCGATTAATAAAATTTTGGATAACGAAGAAGCTTTGGCTG
AAGTCCCACATTTATCTAAGAAAAAGCAAAAACAAATTGCCGAACAAATCTATAGTAACCAAGAAGTAGAAAAGATTATG
ATACGTCTGCATGATTTAGGTTTCGGCCCTAAATTATCTATGAATATTTATCAGGTCTATCAAGTAGAGACATTATCGGA
AATTGAAAAGAATCCATATCAGCTGGTCTATGATGTGAAAGGTGTCGGTTTTAATAAAGCTGACACTTTAGCTAAAAATC
TTGGGATAGAATACAACGACCCCGAGCGATTGAAAGCTGGCTTATTGTATACCATTGAAGAAGAATGTATTAAACAAGGC
CACACTTATTTGCCGAAAGATTATGTCATAGAAGCCTCTCAAGATACGTTATCGCAAGTACATAGCGAATCTATTGATGC
TAAATTGTTGGAAGAGATGATTTTGCAACTGACAGAGGAAGAGAAGCTGGTGGAAGCGGATGAAACCCTTTCTGTTCCAA
GTTTATATTATTCCGAAGTGAAAAGTGTACAGAATTTATATCGTATAGAAGCACATCAAACCAAATTAGAAACTATCGAG
CAATCAGACTTGCAGATGCATATCGGTGAAATTGAAGATATGAATAAAGTGAATTATGCCGCTTCGCAAAAGGAAGCCTT
AGAGACTGCAATCAATTCTAAAGTAATGCTGCTGACTGGCGGTCCAGGTACAGGGAAAACTACGGTTATCAAAGGGATTG
TGGAACTTTACGCAGAAATCCACGGTTTATCGCTCGATTATGATGATTATAATGAAGACGATTATCCTATCGCCTTAGCA
GCGCCTACAGGACGAGCCGCTAAAAGATTACAAGAATCTACGGGTTTAGAAGCCATGACGATTCATCGTTTGATTGGTTG
GAGTCAAGAAACGAAACCAGAAGATGTATTAGAAAATGAAATTAATGCTAAGTTGATTATCATTGATGAAATGTCGATGG
TAGATACTTGGTTGTTCCATCAATTTTTAAATGCCGTACCGATTGATGCGCAAGTTATTCTAGTTGGTGATGAAGACCAA
TTACCTTCTGTAGGACCAGGTCAAGTCTTTAAGGACTTGATTGATTCTAAAGTGATACCACGCGTGAATTTGACCGAAGT
TTATCGGCAACAAGATGGTTCAAGCATTATCGAATTAGCGCATAAAATGAAATTAGGACAACCAATTGATATTACTCAAC
GCTTCCATGATCGCAGTTTCATCCCATGCAGTGCCGATCAGATTCCTGATGTCGTTAATAAAGTAGTGACTTCCGCTGTT
AAAAAAGGATATGATATGAGCGATATACAGGTGCTAGCACCTATGTATAGAGGAAGCGCAGGTATTAAACGCTTAAATAA
AGTACTTCAAGATATCTTGAACCCTAAAGAAGAAGATACTCGAGAAATAGAATTTGGCGATGTTGTTTTTCGAAAAGGCG
ATAAAGTACTACAACTAGTGAACCGTCCGAATGATAATATCTTCAATGGTGATATTGGAGTTATTCAAGGTATTTTCTGG
GCAAAAGAAAATGAATTAAATAAAGACGTCTTGGTTGTGGATTTTGAAGGTAATGAAATCACTTTTACGAAACAAGACAT
GATGGAATTGACGCATGCTTACTGTACTTCAATTCATAAAGCACAAGGTTCAGAGTTTCCAATCGTGATTATGCCGATTG
TTAAACAGTATTATCGTATGCTGCAACGACCGATTATCTATACAGGTTTGACTCGCGCAAAACAATCATTAGTCTTTTTA
GGAGACAGCCAAGCCTTTGATATTGGAATGCAAACGTACGGACAGGTGCGTATGACCCGCATGGCACAACTACTGCGCGA
TTATTTCGGCACGGAAGCATCGTCAAGTGAAACTGAAGAGAACCATTCAACTTCAACTGCAGAACAAAATACTAAAGTCA
TCGAACTGTCAGAAGCTACTATTTTCAAAATCGATCCGATGATTGGAATGGGCGATGTTACACCTTATAGTTTTGCGCCT
GAAAAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• AAA domain (AAA_30) (339-544)

3D structure

• AlphaFold DB: A0A239U1W1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.998	100	0.51