Detailed information NTG1147091

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: CKW02_RS12540
• Genome accession: NZ_LT906438
• Coordinates: 2430126..2432510 (-)
• Length: 794 a.a.
• NCBI ID: WP_003216666.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain NCTC10337
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2425126..2437510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKW02_RS12505 (SAMEA4076707_02540)	-	2426188..2426916 (+)	729	WP_003216774.1	amino acid ABC transporter ATP-binding protein	-
CKW02_RS12510 (SAMEA4076707_02541)	-	2426930..2427739 (+)	810	WP_003216364.1	transporter substrate-binding domain-containing protein	-
CKW02_RS12515 (SAMEA4076707_02542)	-	2427820..2428473 (+)	654	WP_003216507.1	amino acid ABC transporter permease	-
CKW02_RS12520 (SAMEA4076707_02543)	-	2428489..2429139 (+)	651	WP_003216394.1	amino acid ABC transporter permease	-
CKW02_RS12525 (SAMEA4076707_02544)	-	2429175..2429306 (-)	132	WP_003216198.1	YrzQ family protein	-
CKW02_RS12530 (SAMEA4076707_02545)	-	2429327..2429518 (-)	192	WP_003216308.1	hypothetical protein	-
CKW02_RS12535 (SAMEA4076707_02546)	-	2429532..2429990 (-)	459	WP_034620649.1	PRC-barrel domain-containing protein	-
CKW02_RS12540 (SAMEA4076707_02547)	recD2	2430126..2432510 (-)	2385	WP_003216666.1	ATP-dependent RecD-like DNA helicase	Machinery gene
CKW02_RS12545 (SAMEA4076707_02548)	-	2432530..2433183 (-)	654	WP_003216571.1	tetratricopeptide repeat protein	-
CKW02_RS12550 (SAMEA4076707_02549)	mnmA	2433244..2434362 (-)	1119	WP_003216305.1	tRNA 2-thiouridine(34) synthase MnmA	-
CKW02_RS12555 (SAMEA4076707_02550)	-	2434458..2435600 (-)	1143	WP_003216474.1	cysteine desulfurase family protein	-
CKW02_RS12560 (SAMEA4076707_02551)	cymR	2435619..2436038 (-)	420	WP_034620651.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89019.54 Da
• Isoelectric Point: 5.2097

>NTDB_id=1147091 CKW02_RS12540 WP_003216666.1 2430126..2432510(-) (recD2) [Bacillus pumilus strain NCTC10337]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGSQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSVDQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTEEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=1147091 CKW02_RS12540 WP_003216666.1 2430126..2432510(-) (recD2) [Bacillus pumilus strain NCTC10337]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCATTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGCAAAGTCACAAGTCACCCGAAATTTGGTGAA
CAGTTTCAGGCGACTCATTTTCAAAAGGAAGTACCGACAACAAAGCAAGGAATCATTCATTATCTCTCAAGTGATTTATT
CGAAGGGATAGGGAAAAAGACGGCGGAAGAAATTGTGGGGCAGCTTGGCAGTCAGACGCTTCATAAAATTATGCGTGACC
CAGCTGTTTTGTATGACGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCCGCAGCGCTCCAGGAGCATCAAGGA
TTGGAACAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCACAGCTCAGCATGAAGATATATCAAGTGTACGAGAG
TGAGACGCTGCAGAAGATTGAAGAAAACCCTTATCAGCTCGTCAAGGATGTCGAAGGAATCGGATTTATTAAGGCGGATG
AACTTGGCGCTAGAACCGGTATCTCAGGAAATGACCCAGAGCGAATCCGTGCAGCCTTGCTTTATACAGTGGAGACAGCC
AGCCTTCAGGACGGTCATACGTACATACAAACAAAGGATTTGATCGTCGAAACCCGAAAACTGCTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGACGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCCGAGCAAAGTGTCGCCAAACGTATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGACCAATTCCCTGAATCAGAATTCCTTCTAGCCCTTGGTGAGCTAGAGGAACGGCTGGGCGTCCAGTATGCACC
GACACAAAAAGAAGCGATTCAAAAGGCGCTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAGACAA
CAGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGAATGACAGAATCAACAGGGCTTCCAGCTGTGAC
GATTCACCGGCTGCTTGGTTGGAACGGGTCAGAGGGATTCTCGCATGATGAAGAACAGCCGATCGAAGGAAAGCTTGTCA
TTATTGATGAATCAAGTATGCTAGATATTTGGCTTGCGAATCACTTGTTTAAAGCCATTCCTGACCATATCCAAGTGATC
ATGGTTGGGGATGAACATCAGCTTCCGTCTGTCGGACCAGGCCAAGTGTTAAGAGACTTGCTTGCATCACAAGCTGTGCC
AGCTGTTACCCTGACAGATATTTACCGTCAGGCAGACGGCTCCAGCATTGTTGAGCTTGCACATGATATGAAAAATGGCG
TCCTGCCAAAGGATATTACCGCACGTTCAAAGGATCGATCTTTCATAAAATGCTCAGTTGATCAAATGAAAGAAGTGATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCTAAAGACATTCAAGTGCTTGCGCCCATGTATAAAGGAAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTTAAATCCTAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACCGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAGAACAATATTTTTAACGGTGATATT
GGCGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGACATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACCTTTACAAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGCTCCATCCACAAATCACAAGGCAGTGAAT
TCCCCATCGTTGTGCTTCCAGTCGTGAGAAGCTACTACAGAATGCTTCGGCGAAATCTGCTGTACACAGCCATTACACGA
AGTAAAAAGTTTTTAATTCTGTGCGGCGAGGAATCAGCACTGGAGTGGGGCGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTCGTGCAAACCGAAGAGGTTATGGATGCGGAGCTTGCAGCACTTCAAAAAGAACTGCCGT
TTAGCGTGCATGATGCAAATATCGGTATGGAGGGAATCACTCCATTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• AAA domain (AAA_30) (345-552)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80.276	100	0.805