Detailed information NTG1147079

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: CKW02_RS07935
• Genome accession: NZ_LT906438
• Coordinates: 1575416..1576195 (+)
• Length: 259 a.a.
• NCBI ID: WP_003210838.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain NCTC10337
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1570416..1581195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKW02_RS07915 (SAMEA4076707_01606)	trmFO	1571120..1572424 (+)	1305	WP_003212444.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
CKW02_RS07920 (SAMEA4076707_01607)	xerC	1572487..1573404 (+)	918	WP_003211704.1	tyrosine recombinase XerC	-
CKW02_RS07925 (SAMEA4076707_01608)	hslV	1573419..1573964 (+)	546	WP_003211247.1	ATP-dependent protease subunit HslV	-
CKW02_RS07930 (SAMEA4076707_01609)	hslU	1573981..1575381 (+)	1401	WP_003211907.1	HslU--HslV peptidase ATPase subunit	-
CKW02_RS07935 (SAMEA4076707_01610)	codY	1575416..1576195 (+)	780	WP_003210838.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
CKW02_RS07940 (SAMEA4076707_01611)	flgB	1576482..1576871 (+)	390	WP_012009952.1	flagellar basal body rod protein FlgB	-
CKW02_RS07945 (SAMEA4076707_01612)	flgC	1576871..1577323 (+)	453	WP_003212391.1	flagellar basal body rod protein FlgC	-
CKW02_RS07950 (SAMEA4076707_01613)	fliE	1577335..1577652 (+)	318	WP_003212183.1	flagellar hook-basal body complex protein FliE	-
CKW02_RS07955 (SAMEA4076707_01614)	fliF	1577702..1579294 (+)	1593	WP_034619909.1	flagellar basal-body MS-ring/collar protein FliF	-
CKW02_RS07960 (SAMEA4076707_01615)	fliG	1579306..1580322 (+)	1017	WP_003210883.1	flagellar motor switch protein FliG	-
CKW02_RS07965 (SAMEA4076707_01616)	fliH	1580315..1581079 (+)	765	WP_003212485.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29060.31 Da
• Isoelectric Point: 4.6614

>NTDB_id=1147079 CKW02_RS07935 WP_003210838.1 1575416..1576195(+) (codY) [Bacillus pumilus strain NCTC10337]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1147079 CKW02_RS07935 WP_003210838.1 1575416..1576195(+) (codY) [Bacillus pumilus strain NCTC10337]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGGACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	95.367	100	0.954
codY	Lactococcus lactis subsp. lactis strain DGCC12653	48.031	98.069	0.471