Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PPSQR21_RS11920 Genome accession   NZ_CP006872
Coordinates   2759701..2761551 (+) Length   616 a.a.
NCBI ID   WP_025364882.1    Uniprot ID   -
Organism   Paenibacillus polymyxa SQR-21     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2754701..2766551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPSQR21_RS11900 (PPSQR21_024430) - 2755228..2756901 (+) 1674 WP_025364878.1 RICIN domain-containing protein -
  PPSQR21_RS26555 - 2757068..2757283 (+) 216 Protein_2332 nitronate monooxygenase -
  PPSQR21_RS11910 (PPSQR21_024440) - 2757458..2757865 (+) 408 WP_025364880.1 MarR family winged helix-turn-helix transcriptional regulator -
  PPSQR21_RS11915 (PPSQR21_024450) rcrP 2757945..2759714 (+) 1770 WP_025364881.1 ABC transporter ATP-binding protein Regulator
  PPSQR21_RS11920 (PPSQR21_024460) rcrQ 2759701..2761551 (+) 1851 WP_025364882.1 ABC transporter ATP-binding protein Regulator
  PPSQR21_RS11925 (PPSQR21_024470) - 2761759..2762526 (+) 768 WP_016818807.1 IclR family transcriptional regulator -
  PPSQR21_RS11930 (PPSQR21_024480) - 2762713..2763402 (+) 690 WP_019687275.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68172.08 Da        Isoelectric Point: 6.8232

>NTDB_id=114704 PPSQR21_RS11920 WP_025364882.1 2759701..2761551(+) (rcrQ) [Paenibacillus polymyxa SQR-21]
MDKNEHTVGSKHIEMKQRGPIGRGPTEGMGTGKKANDFKKNIRQLLSYIKAYMPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDVNAVQKIVLVLAVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTIIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELVDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLIRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSKEHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKNGFYADLYNSQFEHVS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=114704 PPSQR21_RS11920 WP_025364882.1 2759701..2761551(+) (rcrQ) [Paenibacillus polymyxa SQR-21]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGCACATCGAAATGAAACAGCGAGGTCCCATAGGTAGAGGTCCTACGGA
AGGGATGGGAACTGGTAAAAAAGCGAATGATTTTAAAAAGAACATTCGCCAGCTCTTATCCTACATCAAGGCTTATATGC
CTATGATCATACTCTCTATGGTGCTGGCGCTGGCCGGTTCCGTCTTCAACGTGATTGGTCCAGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGATTGATGTGAATGCTGTTCAGAAGATTGTTCTTGTATTGGCAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCCACTAGCTATGGTAATGTGCTTAGCCGT
GTGACCAATGATGTCGATACGATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTATATACGAACTGGATCATGACCATTACTGGGATTGTAGCTACGCTGATCGGTTTTTCAC
TGATGACCATAATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCAGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAAGAAGTGTTTCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTTGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATCGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCTTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCAGCTGC
TAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGTGGATGAGAGCGACAAGACCATGAAGCTGGATAACGCCA
AAGGGGATGTCGAATTTAAGCATGTCCGTTTCGGTTATAATGAAGACCATATGATTATCAAAGATTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGCCCTACAGGTGCCGGTAAGACGACGCTCGTGAATTTGCTCATACGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GCATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCATAGCTTCCTTAAAACTTTACCGCAGGGTTATGATACAGTGCT
AGACGACAAAGCTAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCCATGC
TCATTCTGGACGAGGCCACAAGTTCGGTCGATACGCGTACGGAGTTACTGATTCAACAAGCGATGGACCGACTTACTGTT
GGGAAAACCTCCTTTGTGATTGCCCACCGTCTCTCAACGATTAAAAACGCCGATCTGATTCTGGTCATGAAGGACGGTAA
CATTATCGAAACGGGTAATCATGAGGAATTGCTAGGTAAAAACGGATTCTATGCCGATTTATACAACAGCCAGTTTGAAC
ATGTATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(56-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.806

93.669

0.523

Multiple sequence alignment