Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | BCM300_RS02525 | Genome accession | NZ_LT837687 |
| Coordinates | 505084..505347 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177718.1 | Uniprot ID | A0AAV3IH30 |
| Organism | Helicobacter pylori isolate BCM-300 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 500084..510347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCM300_RS02505 (BCM300_00491) | - | 501020..502156 (-) | 1137 | WP_089086746.1 | VirB8/TrbF family protein | - |
| BCM300_RS08490 | - | 502149..502289 (-) | 141 | WP_000789928.1 | hypothetical protein | - |
| BCM300_RS02515 | - | 502286..504836 (-) | 2551 | Protein_476 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| BCM300_RS02520 (BCM300_00494) | - | 504836..505072 (-) | 237 | WP_001168537.1 | hypothetical protein | - |
| BCM300_RS02525 (BCM300_00495) | comB3 | 505084..505347 (-) | 264 | WP_001177718.1 | hypothetical protein | Machinery gene |
| BCM300_RS02530 (BCM300_00496) | comB2 | 505359..505643 (-) | 285 | WP_000413637.1 | TrbC/VirB2 family protein | Machinery gene |
| BCM300_RS02535 (BCM300_00497) | - | 505631..506119 (-) | 489 | WP_089086747.1 | hypothetical protein | - |
| BCM300_RS02540 (BCM300_00498) | - | 506183..506341 (-) | 159 | WP_231899360.1 | hypothetical protein | - |
| BCM300_RS02545 (BCM300_00499) | - | 506344..507144 (-) | 801 | WP_089086748.1 | integrase | - |
| BCM300_RS02550 (BCM300_00500) | - | 507199..507735 (+) | 537 | Protein_483 | DNA adenine methylase | - |
| BCM300_RS02555 (BCM300_00501) | - | 507738..508361 (+) | 624 | WP_089086749.1 | GIY-YIG nuclease family protein | - |
| BCM300_RS02560 (BCM300_00502) | - | 508509..508871 (+) | 363 | Protein_485 | DNA cytosine methyltransferase | - |
| BCM300_RS02565 (BCM300_00504) | - | 509031..509975 (-) | 945 | WP_089086751.1 | catalase family peroxidase | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9988.86 Da Isoelectric Point: 5.7206
>NTDB_id=1146337 BCM300_RS02525 WP_001177718.1 505084..505347(-) (comB3) [Helicobacter pylori isolate BCM-300]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=1146337 BCM300_RS02525 WP_001177718.1 505084..505347(-) (comB3) [Helicobacter pylori isolate BCM-300]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |