Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B5449_RS04540 Genome accession   NZ_LT821227
Coordinates   1044925..1046685 (-) Length   586 a.a.
NCBI ID   WP_079536019.1    Uniprot ID   -
Organism   Phoenicibacter congonensis strain Marseille-P3241     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039925..1051685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5449_RS04525 - 1041109..1041462 (-) 354 WP_079536011.1 DUF2513 domain-containing protein -
  B5449_RS06615 - 1041571..1041819 (-) 249 Protein_867 hypothetical protein -
  B5449_RS04530 - 1042088..1042999 (-) 912 WP_079536013.1 LysR family transcriptional regulator -
  B5449_RS04535 - 1043097..1044935 (-) 1839 WP_079536016.1 ABC transporter ATP-binding protein -
  B5449_RS04540 rcrP 1044925..1046685 (-) 1761 WP_079536019.1 ABC transporter ATP-binding protein Regulator
  B5449_RS04545 - 1046835..1047791 (-) 957 WP_079536022.1 ABC transporter ATP-binding protein -
  B5449_RS04550 - 1047791..1048768 (-) 978 WP_079536026.1 ABC transporter ATP-binding protein -
  B5449_RS04555 - 1048768..1049589 (-) 822 WP_079536029.1 ABC transporter permease -
  B5449_RS04560 - 1049589..1050548 (-) 960 WP_079536033.1 ABC transporter permease -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64600.48 Da        Isoelectric Point: 9.3877

>NTDB_id=1146268 B5449_RS04540 WP_079536019.1 1044925..1046685(-) (rcrP) [Phoenicibacter congonensis strain Marseille-P3241]
MFKLLKYTTKKERCFAVIALIFVILGVWLDLKLPDYMREITQLVQTQGSQLGDVLNAGGKMIICSLLSAGTTIVVGYTVA
HVAAGFAKTLRNKVYSKTIDFGKEEISKFSNASLITRTTNDVMQIQMFIAMGLQAIARAPIMAAWAAFKIAGKSWQWTSA
TVVAVIILIMVMVTISCLVIPRFKIMQKLTDNLNKTSRENIVGIRVVHAYNAEMYQQNKFEQANNELTRTQLFTTRSMSF
LFPTVGMIMSGLTLAIYTIGVLIINDSSVPARLPLFSDMVVFSSYAMQIIMSFMMITVAFFIGPRAFVAAGRINEVLDTN
IAIVSGKKTKVDDAMAGTVEFKNVTFKYPDAEHAVLRNISFVAKKGETVAIIGSTGSGKSSLVQLIPRLFDCTSGQILVD
GNNVCELDEHFLRKIVGYIPQKPFLFKGTIKSNIIYGEVGQVDDSRIEKALMISQASDFVKSLDLGLNSEVAQSGSNLSG
GQRQRISIARAIYKNPEIIIFDDSFSALDYKTDSAVREALTKELGGTTRIIVAQRIGTIMDADQILVIDDGHVVGHGKHS
ELLKTCKVYREIAESQLSEEELKNAR

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1146268 B5449_RS04540 WP_079536019.1 1044925..1046685(-) (rcrP) [Phoenicibacter congonensis strain Marseille-P3241]
ATGTTTAAACTGCTCAAGTACACAACGAAAAAAGAGAGATGTTTTGCTGTCATAGCTCTTATCTTTGTAATTCTGGGTGT
TTGGTTAGACCTTAAATTGCCAGACTACATGAGAGAAATCACTCAGCTAGTGCAAACTCAAGGATCACAGCTTGGCGATG
TTCTCAATGCAGGCGGCAAAATGATTATTTGTTCATTATTAAGCGCAGGAACAACAATTGTTGTTGGCTATACTGTCGCA
CATGTTGCTGCAGGCTTTGCAAAAACTCTTCGTAATAAAGTCTATTCCAAAACAATTGATTTTGGAAAGGAAGAGATTTC
TAAATTCTCAAACGCTTCTTTGATTACACGCACTACAAACGATGTTATGCAGATTCAAATGTTTATTGCGATGGGCCTAC
AAGCAATTGCACGCGCACCAATTATGGCTGCATGGGCTGCATTTAAAATTGCTGGCAAAAGTTGGCAATGGACATCTGCA
ACTGTTGTAGCTGTGATAATCCTAATCATGGTGATGGTAACCATTAGCTGCCTTGTAATTCCTCGTTTTAAAATCATGCA
GAAGCTGACCGATAACCTAAACAAGACTTCAAGAGAAAACATTGTAGGCATTCGCGTTGTACATGCCTACAATGCAGAAA
TGTACCAACAAAATAAATTTGAACAAGCCAACAATGAACTAACAAGAACTCAGCTGTTTACAACTCGCTCAATGTCGTTT
CTATTCCCAACTGTAGGAATGATAATGAGTGGTTTAACTCTTGCAATTTACACAATTGGAGTCCTAATCATAAATGATTC
ATCAGTTCCTGCTAGGTTGCCACTATTTAGCGATATGGTTGTGTTTTCTTCATATGCAATGCAAATAATCATGTCATTTA
TGATGATTACTGTTGCTTTTTTCATTGGGCCACGCGCTTTTGTAGCTGCAGGACGAATAAATGAAGTACTTGATACAAAC
ATTGCAATTGTCTCAGGCAAGAAAACAAAAGTCGACGACGCAATGGCTGGCACTGTGGAATTCAAAAACGTTACTTTTAA
ATATCCTGATGCAGAACACGCAGTGTTGCGAAACATTTCTTTTGTCGCAAAAAAAGGCGAGACAGTCGCAATAATTGGTT
CAACTGGTTCTGGAAAATCGTCCCTAGTTCAACTAATCCCTCGATTGTTTGACTGCACGTCTGGACAAATTCTTGTAGAT
GGAAATAATGTTTGCGAATTAGATGAGCATTTTTTACGGAAAATAGTTGGCTACATTCCACAAAAGCCATTTCTATTTAA
AGGCACAATTAAATCTAACATCATCTATGGCGAAGTCGGCCAGGTCGATGACTCCAGAATTGAAAAAGCATTGATGATTT
CTCAGGCAAGCGATTTTGTTAAAAGCCTTGATTTGGGATTAAATTCAGAAGTTGCACAGAGCGGTTCTAATTTGTCAGGT
GGTCAACGGCAACGCATATCAATTGCACGTGCAATTTATAAGAACCCTGAAATTATCATATTTGACGATTCTTTCAGTGC
ACTTGACTATAAAACCGACTCTGCAGTTAGGGAAGCTCTGACTAAAGAGTTAGGTGGTACTACGAGAATAATAGTCGCCC
AACGCATTGGGACTATTATGGATGCCGATCAAATTCTAGTAATTGACGATGGCCACGTTGTTGGACATGGAAAACATTCA
GAACTTTTAAAAACTTGCAAAGTATACCGTGAAATTGCGGAATCCCAGTTATCTGAAGAAGAGTTGAAAAATGCAAGATG
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-504)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.167

100

0.503

Multiple sequence alignment