Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   BUC38_RS08125 Genome accession   NZ_LT671674
Coordinates   1655650..1656489 (-) Length   279 a.a.
NCBI ID   WP_044690565.1    Uniprot ID   A0A0Z8I530
Organism   Streptococcus suis strain LS9N     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1650650..1661489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS08110 uidA 1651007..1652806 (-) 1800 WP_044690567.1 beta-glucuronidase -
  BUC38_RS08115 - 1652822..1653850 (-) 1029 WP_044690566.1 sugar kinase -
  BUC38_RS08120 - 1653913..1655463 (-) 1551 WP_029176959.1 MFS transporter -
  BUC38_RS08125 endA 1655650..1656489 (-) 840 WP_044690565.1 DNA/RNA non-specific endonuclease Machinery gene
  BUC38_RS08130 - 1656519..1656710 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  BUC38_RS08135 murA 1656703..1657986 (-) 1284 WP_044690564.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BUC38_RS08140 - 1658010..1658234 (-) 225 WP_012775178.1 DUF1146 family protein -
  BUC38_RS08145 - 1658294..1658710 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  BUC38_RS08150 atpD 1658720..1660126 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  BUC38_RS08155 - 1660146..1661024 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30065.37 Da        Isoelectric Point: 7.4544

>NTDB_id=1146003 BUC38_RS08125 WP_044690565.1 1655650..1656489(-) (endA) [Streptococcus suis strain LS9N]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVANYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGGTVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLIYADEDELVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1146003 BUC38_RS08125 WP_044690565.1 1655650..1656489(-) (endA) [Streptococcus suis strain LS9N]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTAATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGTAAGCCCTATGCGGATAATAAGACAAA
GACTGTGCAGGGGGGAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACTCCGCCTGGCTGGCATCAGGTACAGGATTTGGATGGATCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAGAGTCAAGTTC
GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGCGTGACCTTGATTTATGCTGATGAGGATGAGTTGGTTCCAGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8I530

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

73.729

84.588

0.624
  endA Streptococcus pneumoniae D39

73.729

84.588

0.624
  endA Streptococcus pneumoniae R6

73.729

84.588

0.624
  endA Streptococcus pneumoniae TIGR4

73.729

84.588

0.624

Multiple sequence alignment