Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   BUC38_RS00860 Genome accession   NZ_LT671674
Coordinates   147123..148076 (+) Length   317 a.a.
NCBI ID   WP_044690496.1    Uniprot ID   A0A0Z8IR47
Organism   Streptococcus suis strain LS9N     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142123..153076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS00845 - 142917..144227 (+) 1311 WP_052503073.1 hypothetical protein -
  BUC38_RS00850 - 144420..145331 (+) 912 WP_153597574.1 Rpn family recombination-promoting nuclease/putative transposase -
  BUC38_RS00855 - 145783..147012 (+) 1230 WP_052503075.1 hypothetical protein -
  BUC38_RS00860 comYH 147123..148076 (+) 954 WP_044690496.1 class I SAM-dependent methyltransferase Machinery gene
  BUC38_RS00865 - 148126..149313 (+) 1188 WP_044690498.1 acetate kinase -
  BUC38_RS00870 - 149628..150179 (+) 552 WP_044690499.1 folate family ECF transporter S component -
  BUC38_RS00875 - 150235..151491 (+) 1257 WP_044690501.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BUC38_RS00880 pepA 151535..152596 (-) 1062 WP_044690502.1 glutamyl aminopeptidase -
  BUC38_RS12575 - 152738..152842 (+) 105 WP_125175873.1 type I toxin-antitoxin system Fst family toxin -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35599.70 Da        Isoelectric Point: 4.5112

>NTDB_id=1145977 BUC38_RS00860 WP_044690496.1 147123..148076(+) (comYH) [Streptococcus suis strain LS9N]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYLAGQHDTDLIVRNNQALHDLHLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLLATQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASMADVMGTE
ISFAQGDAVRPQILKESQVIVADLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQAEANIVAMIALPPSLFGKAAMAKSIFVLQKKTARALAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1145977 BUC38_RS00860 WP_044690496.1 147123..148076(+) (comYH) [Streptococcus suis strain LS9N]
ATGAATTTTGAGAAGATTGAACAGGCCTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAACTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAACGCAGCCTATCTGGCTGGTCAGCACGACACGGATTTGATTGTCCGCAACAACC
AAGCCTTACACGACTTGCACTTGACCAAGGAAGAATGGCGTCGCGCCTTTCAATTCCTGCTCATCAAGGCCAATCAGACA
GAGCCTATGCAGTACAATCACCAGTTTACACCGGATTCTATCGGCTTTATCCTATCATTCTTAGTGGATCAGTTGCTGGC
TACTCAAAAGGTAACAGTCTTGGAAATTGGTTCGGGGACAGGGAACTTAGCTCAGACCATTCTCAATGCCAGCCAGAAAG
ACTTGGACTATCTGGGGATTGAAGTAGATGATCTCTTGATTGATTTATCAGCTAGCATGGCAGATGTGATGGGGACAGAG
ATTTCTTTTGCCCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTCATTGTAGCGGATCTGCCAATCGG
ATACTATCCAGATGATCAGATTGCTAGTCGTTATCAGGTGGCTAGCCAGACAGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGCTTTGCTATTCTCTTGGCTCCGAATGATTTATTGACTAGTCCACAG
AGTGATTTGTTGAAAGGTTGGTTGCAAGCAGAGGCTAATATCGTTGCCATGATTGCCCTGCCACCAAGTCTTTTTGGTAA
AGCTGCCATGGCCAAGTCAATTTTTGTCTTGCAGAAGAAGACAGCTAGAGCACTAGCGCCATTTGTCTATCCCTTGCAGA
GCTTGCAAGAACCTGAAGCCATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8IR47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

60.443

99.685

0.603
  comYH Streptococcus mutans UA159

60.127

99.685

0.599

Multiple sequence alignment