Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CS883_RS02515 | Genome accession | NZ_LT635476 |
| Coordinates | 505085..505348 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177718.1 | Uniprot ID | A0AAV3IH30 |
| Organism | Helicobacter pylori isolate HE134/09 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 500085..510348
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS883_RS02495 | - | 501021..502157 (-) | 1137 | WP_089086746.1 | VirB8/TrbF family protein | - |
| CS883_RS08405 | - | 502150..502290 (-) | 141 | WP_000789928.1 | hypothetical protein | - |
| CS883_RS02505 | - | 502287..504837 (-) | 2551 | Protein_479 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| CS883_RS02510 | - | 504837..505073 (-) | 237 | WP_001168537.1 | hypothetical protein | - |
| CS883_RS02515 | comB3 | 505085..505348 (-) | 264 | WP_001177718.1 | hypothetical protein | Machinery gene |
| CS883_RS02520 | comB2 | 505360..505644 (-) | 285 | WP_000413637.1 | TrbC/VirB2 family protein | Machinery gene |
| CS883_RS02525 | - | 505632..506120 (-) | 489 | WP_089086747.1 | hypothetical protein | - |
| CS883_RS02530 | - | 506184..506342 (-) | 159 | WP_231899360.1 | hypothetical protein | - |
| CS883_RS02535 | - | 506345..507145 (-) | 801 | WP_089086748.1 | integrase | - |
| CS883_RS02540 | - | 507200..507736 (+) | 537 | Protein_486 | DNA adenine methylase | - |
| CS883_RS02545 | - | 507739..508362 (+) | 624 | WP_089086749.1 | GIY-YIG nuclease family protein | - |
| CS883_RS02550 | - | 508510..508872 (+) | 363 | Protein_488 | DNA cytosine methyltransferase | - |
| CS883_RS02555 | - | 509032..509976 (-) | 945 | WP_089086751.1 | catalase family peroxidase | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9988.86 Da Isoelectric Point: 5.7206
>NTDB_id=1145847 CS883_RS02515 WP_001177718.1 505085..505348(-) (comB3) [Helicobacter pylori isolate HE134/09]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=1145847 CS883_RS02515 WP_001177718.1 505085..505348(-) (comB3) [Helicobacter pylori isolate HE134/09]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |