Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   CS883_RS00115 Genome accession   NZ_LT635476
Coordinates   16433..16696 (+) Length   87 a.a.
NCBI ID   WP_000584948.1    Uniprot ID   A0AB72ZTB6
Organism   Helicobacter pylori isolate HE134/09     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11433..21696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS883_RS00085 groES 11716..12072 (-) 357 WP_000671927.1 co-chaperone GroES -
  CS883_RS00095 dnaG 12359..14038 (+) 1680 WP_089086464.1 DNA primase -
  CS883_RS00100 - 14035..15087 (+) 1053 WP_089086465.1 MnmA/TRMU family protein -
  CS883_RS00105 - 15180..16007 (+) 828 WP_001154942.1 DUF5718 family protein -
  CS883_RS00110 comB2 16152..16433 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  CS883_RS00115 comB3 16433..16696 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  CS883_RS00120 comB4 16698..19064 (+) 2367 WP_089086466.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CS883_RS00130 - 19369..20709 (+) 1341 WP_001876830.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9992.05 Da        Isoelectric Point: 9.5290

>NTDB_id=1145835 CS883_RS00115 WP_000584948.1 16433..16696(+) (comB3) [Helicobacter pylori isolate HE134/09]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=1145835 CS883_RS00115 WP_000584948.1 16433..16696(+) (comB3) [Helicobacter pylori isolate HE134/09]
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment