Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CS896_RS00110 Genome accession   NZ_LT635474
Coordinates   16154..16435 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori isolate HE171/09     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11154..21435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS896_RS00085 groES 11718..12074 (-) 357 WP_000671927.1 co-chaperone GroES -
  CS896_RS00095 dnaG 12361..14040 (+) 1680 WP_089086464.1 DNA primase -
  CS896_RS00100 - 14037..15089 (+) 1053 WP_089086465.1 MnmA/TRMU family protein -
  CS896_RS00105 - 15182..16009 (+) 828 WP_001154942.1 DUF5718 family protein -
  CS896_RS00110 comB2 16154..16435 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  CS896_RS00115 comB3 16435..16698 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  CS896_RS00120 comB4 16700..19066 (+) 2367 WP_089086466.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CS896_RS00130 - 19371..20711 (+) 1341 WP_001876830.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=1145802 CS896_RS00110 WP_001272686.1 16154..16435(+) (comB2) [Helicobacter pylori isolate HE171/09]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=1145802 CS896_RS00110 WP_001272686.1 16154..16435(+) (comB2) [Helicobacter pylori isolate HE171/09]
ATGTCCGCTCATTTTTTGAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATCTTCTTGTTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment