Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QI18_RS00560 Genome accession   NZ_CP010050
Coordinates   102239..103498 (-) Length   419 a.a.
NCBI ID   WP_010905110.1    Uniprot ID   Q9CJA3
Organism   Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97239..108498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI18_RS13035 - 98236..98429 (+) 194 Protein_96 hypothetical protein -
  QI18_RS00540 (QI18_00540) rpmG 98850..98999 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  QI18_RS00545 (QI18_00545) rpmF 99029..99202 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  QI18_RS00550 (QI18_00550) - 99565..101346 (+) 1782 WP_021722893.1 heavy metal translocating P-type ATPase -
  QI18_RS00555 (QI18_00555) spo0J 101399..102184 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  QI18_RS00560 (QI18_00560) rarA 102239..103498 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  QI18_RS00565 (QI18_00565) - 103542..104030 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  QI18_RS00570 (QI18_00570) - 104183..104650 (+) 468 WP_021722895.1 DUF3013 family protein -
  QI18_RS00575 (QI18_00575) - 104680..106233 (+) 1554 WP_038598438.1 ABC-F family ATP-binding cassette domain-containing protein -
  QI18_RS00580 (QI18_00580) - 106364..106648 (+) 285 WP_010905114.1 hypothetical protein -
  QI18_RS00585 (QI18_00585) - 106686..107120 (+) 435 WP_021722897.1 YdeI/OmpD-associated family protein -
  QI18_RS00590 (QI18_00590) prmA 107192..108145 (+) 954 WP_039114453.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46781.10 Da        Isoelectric Point: 5.7588

>NTDB_id=114576 QI18_RS00560 WP_010905110.1 102239..103498(-) (rarA) [Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=114576 QI18_RS00560 WP_010905110.1 102239..103498(-) (rarA) [Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAGCTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.479

100

0.599