Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CS893_RS02525 Genome accession   NZ_LT635460
Coordinates   505358..505642 (-) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   A0AB72ZV75
Organism   Helicobacter pylori isolate HE178/09     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500358..510642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS893_RS02500 - 501019..502155 (-) 1137 WP_089086746.1 VirB8/TrbF family protein -
  CS893_RS08405 - 502148..502288 (-) 141 WP_000789928.1 hypothetical protein -
  CS893_RS02510 - 502285..504835 (-) 2551 Protein_480 VirB4 family type IV secretion/conjugal transfer ATPase -
  CS893_RS02515 - 504835..505071 (-) 237 WP_001168537.1 hypothetical protein -
  CS893_RS02520 comB3 505083..505346 (-) 264 WP_001177718.1 hypothetical protein Machinery gene
  CS893_RS02525 comB2 505358..505642 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  CS893_RS02530 - 505630..506118 (-) 489 WP_089086747.1 hypothetical protein -
  CS893_RS02535 - 506182..506340 (-) 159 WP_231899360.1 hypothetical protein -
  CS893_RS02540 - 506343..507143 (-) 801 WP_089086748.1 integrase -
  CS893_RS02545 - 507198..507734 (+) 537 Protein_487 DNA adenine methylase -
  CS893_RS02550 - 507737..508360 (+) 624 WP_089086749.1 GIY-YIG nuclease family protein -
  CS893_RS02555 - 508508..508870 (+) 363 Protein_489 DNA cytosine methyltransferase -
  CS893_RS02560 - 509030..509974 (-) 945 WP_089086751.1 catalase family peroxidase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=1145724 CS893_RS02525 WP_000413637.1 505358..505642(-) (comB2) [Helicobacter pylori isolate HE178/09]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1145724 CS893_RS02525 WP_000413637.1 505358..505642(-) (comB2) [Helicobacter pylori isolate HE178/09]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment