Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLA12_RS11225 Genome accession   NZ_LT599049
Coordinates   2296919..2297857 (-) Length   312 a.a.
NCBI ID   WP_021723475.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain A12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2295764..2301265 2296919..2297857 within 0


Gene organization within MGE regions


Location: 2295764..2301265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLA12_RS11220 (LLA12_02382) - 2295764..2296738 (-) 975 WP_068872845.1 IS30-like element IS6770 family transposase -
  LLA12_RS11225 (LLA12_02383) comYH 2296919..2297857 (-) 939 WP_021723475.1 class I SAM-dependent methyltransferase Machinery gene
  LLA12_RS11230 (LLA12_02384) - 2297953..2298204 (-) 252 WP_038602250.1 DUF3165 family protein -
  LLA12_RS11235 (LLA12_02385) typA 2298305..2300137 (-) 1833 WP_021723473.1 translational GTPase TypA -
  LLA12_RS11240 (LLA12_02386) - 2300306..2301265 (-) 960 WP_000221326.1 IS30-like element IS6770 family transposase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34768.91 Da        Isoelectric Point: 4.3717

>NTDB_id=1144882 LLA12_RS11225 WP_021723475.1 2296919..2297857(-) (comYH) [Lactococcus lactis subsp. lactis strain A12]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1144882 LLA12_RS11225 WP_021723475.1 2296919..2297857(-) (comYH) [Lactococcus lactis subsp. lactis strain A12]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAACCCAATCATGCTATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTGGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTTATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCTGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGGCTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCTTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCATCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.201

100

0.494
  comYH Streptococcus mutans UA159

48.882

100

0.49

Multiple sequence alignment