Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LPM7613_RS04660 Genome accession   NZ_LT598657
Coordinates   1030256..1030804 (+) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila strain Lpm7613 isolate Lpm7613     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025256..1035804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPM7613_RS04650 ravI 1027761..1028771 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  LPM7613_RS04655 pilM 1029188..1030252 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  LPM7613_RS04660 pilN 1030256..1030804 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  LPM7613_RS04665 pilO 1030818..1031417 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  LPM7613_RS04670 pilP 1031414..1032001 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  LPM7613_RS04675 pilQ 1032005..1034101 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  LPM7613_RS04680 aroK 1034547..1035074 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=1144731 LPM7613_RS04660 WP_010946663.1 1030256..1030804(+) (pilN) [Legionella pneumophila strain Lpm7613 isolate Lpm7613]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1144731 LPM7613_RS04660 WP_010946663.1 1030256..1030804(+) (pilN) [Legionella pneumophila strain Lpm7613 isolate Lpm7613]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGAATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTTTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment