Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   C7S05_RS02680 Genome accession   NZ_LT591897
Coordinates   449242..450177 (+) Length   311 a.a.
NCBI ID   WP_010357463.1    Uniprot ID   A0AB74EBP0
Organism   Neisseria gonorrhoeae strain WHO F     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444242..455177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S05_RS02645 (WHOF_00479) - 444743..445252 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  C7S05_RS02655 (WHOF_00481C) - 445482..446062 (-) 581 Protein_456 superoxide dismutase -
  C7S05_RS02665 (WHOF_00482) dnaB 446226..447632 (+) 1407 WP_003704337.1 replicative DNA helicase -
  C7S05_RS02670 (WHOF_00483) pilH 447940..448605 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S05_RS02675 (WHOF_00484) pilI 448637..449245 (+) 609 WP_010357461.1 type IV pilus modification protein PilV Machinery gene
  C7S05_RS02680 (WHOF_00485) pilJ 449242..450177 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  C7S05_RS02685 (WHOF_00486) pilK 450156..450764 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S05_RS02690 (WHOF_00487) pilL 450766..451239 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  C7S05_RS02700 (WHOF_00488C) - 451851..452296 (-) 446 Protein_463 AzlC family ABC transporter permease -
  C7S05_RS02705 (WHOF_00489) dut 452462..452914 (+) 453 WP_003690909.1 dUTP diphosphatase -
  C7S05_RS02710 (WHOF_00490) dapC 452992..454179 (+) 1188 WP_033910019.1 succinyldiaminopimelate transaminase -
  C7S05_RS02715 (WHOF_00491) yaaA 454335..455114 (+) 780 WP_047923971.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34216.91 Da        Isoelectric Point: 8.9718

>NTDB_id=1143963 C7S05_RS02680 WP_010357463.1 449242..450177(+) (pilJ) [Neisseria gonorrhoeae strain WHO F]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFFGVTQKKPLFSLKRNSTNKLIPIAESPNIGYQGFTQRLNALIFQYGIDDANASAETTVVSSCGAISK
PGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKVKRMDVRYIY
VSGCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1143963 C7S05_RS02680 WP_010357463.1 449242..450177(+) (pilJ) [Neisseria gonorrhoeae strain WHO F]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTTCGGTGTGACGCAAAAAAAACCTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCGGATATCAGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATATCGAAA
CCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGGATTCTGATAAGGAGCAAAATGGCAA
TATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCAATAATGAGGAAGGTTTGTTCCGCTTCC
AATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGGTATATCTAT
GTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGGTAAATTCGACAGCTCTGTTAC
GCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTTATGCTT
ACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

89.49

100

0.904

Multiple sequence alignment