Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQL00_RS04750 Genome accession   NZ_LS483523
Coordinates   866832..867758 (+) Length   308 a.a.
NCBI ID   WP_001291294.1    Uniprot ID   A0A0B7KZ00
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 861832..872758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS04735 amiC 863323..864819 (+) 1497 WP_000759905.1 ABC transporter permease Regulator
  DQL00_RS04740 amiD 864819..865745 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  DQL00_RS04745 amiE 865754..866821 (+) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  DQL00_RS04750 amiF 866832..867758 (+) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  DQL00_RS04755 - 867833..869159 (-) 1327 Protein_845 ISL3 family transposase -
  DQL00_RS04765 treR 869314..870024 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  DQL00_RS04770 treP 870209..872176 (+) 1968 WP_000514332.1 PTS system trehalose-specific EIIBC component -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34826.88 Da        Isoelectric Point: 6.6224

>NTDB_id=1142964 DQL00_RS04750 WP_001291294.1 866832..867758(+) (amiF) [Streptococcus pneumoniae strain 4041STDY6836169]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQTELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1142964 DQL00_RS04750 WP_001291294.1 866832..867758(+) (amiF) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCGTCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAACCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844

Multiple sequence alignment