Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   DQL14_RS00590 Genome accession   NZ_LS483488
Coordinates   131739..132023 (-) Length   94 a.a.
NCBI ID   WP_064432016.1    Uniprot ID   A0A060CUX5
Organism   Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126739..137023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL14_RS00570 (NCTC11637_00119) - 126922..131216 (-) 4295 Protein_109 SNF2-related protein -
  DQL14_RS00580 (NCTC11637_00120) - 131216..131452 (-) 237 WP_001168532.1 hypothetical protein -
  DQL14_RS00585 (NCTC11637_00121) comB3 131464..131727 (-) 264 WP_001177716.1 hypothetical protein Machinery gene
  DQL14_RS00590 (NCTC11637_00122) comB2 131739..132023 (-) 285 WP_064432016.1 TrbC/VirB2 family protein Machinery gene
  DQL14_RS00595 (NCTC11637_00123) - 132020..132499 (-) 480 WP_108169480.1 hypothetical protein -
  DQL14_RS00600 (NCTC11637_00124) - 132492..132707 (-) 216 WP_108169481.1 hypothetical protein -
  DQL14_RS00605 (NCTC11637_00125) - 132710..133498 (-) 789 WP_172953003.1 integrase -
  DQL14_RS00610 (NCTC11637_00126) - 133476..134117 (-) 642 WP_108169483.1 restriction endonuclease subunit S -
  DQL14_RS00615 (NCTC11637_00127) - 134105..134881 (-) 777 WP_108169484.1 Abi family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10722.08 Da        Isoelectric Point: 11.1589

>NTDB_id=1142652 DQL14_RS00590 WP_064432016.1 131739..132023(-) (comB2) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMGIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1142652 DQL14_RS00590 WP_064432016.1 131739..132023(-) (comB2) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGAAAAAATTAAGGCATTTTAGAAAACTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGGGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

58.889

95.745

0.564

Multiple sequence alignment