Detailed information NTG1142518

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: DQL46_RS06315
• Genome accession: NZ_LS483482
• Coordinates: 1320169..1322556 (+)
• Length: 795 a.a.
• NCBI ID: WP_070815398.1
• Uniprot ID: -
• Organism: Staphylococcus lugdunensis strain NCTC12217
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1315169..1327556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL46_RS06290 (NCTC12217_01286)	-	1315527..1315667 (+)	141	WP_002458939.1	SAS049 family protein	-
DQL46_RS06295 (NCTC12217_01287)	-	1315869..1316870 (-)	1002	WP_002478089.1	LLM class flavin-dependent oxidoreductase	-
DQL46_RS06300 (NCTC12217_01288)	-	1317100..1318242 (+)	1143	WP_002458941.1	cysteine desulfurase family protein	-
DQL46_RS06305 (NCTC12217_01289)	mnmA	1318242..1319354 (+)	1113	WP_002458942.1	tRNA 2-thiouridine(34) synthase MnmA	-
DQL46_RS06310 (NCTC12217_01290)	-	1319496..1320167 (+)	672	WP_070648439.1	tetratricopeptide repeat protein	-
DQL46_RS06315 (NCTC12217_01291)	recD2	1320169..1322556 (+)	2388	WP_070815398.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DQL46_RS06320 (NCTC12217_01293)	alaS	1322824..1325454 (+)	2631	WP_070648443.1	alanine--tRNA ligase	-
DQL46_RS06325 (NCTC12217_01294)	-	1325520..1325780 (+)	261	WP_002458946.1	IreB family regulatory phosphoprotein	-
DQL46_RS06330 (NCTC12217_01295)	ruvX	1325784..1326212 (+)	429	WP_070481250.1	Holliday junction resolvase RuvX	-
DQL46_RS06335 (NCTC12217_01296)	-	1326225..1326533 (+)	309	WP_002458948.1	DUF1292 domain-containing protein	-
DQL46_RS06340 (NCTC12217_01297)	-	1326895..1327536 (+)	642	WP_002478093.1	O-methyltransferase	-

Sequence

Protein

• Length: 795 a.a.
• Molecular weight: 89640.44 Da
• Isoelectric Point: 4.8907

>NTDB_id=1142518 DQL46_RS06315 WP_070815398.1 1320169..1322556(+) (recD2) [Staphylococcus lugdunensis strain NCTC12217]
MDNPTLFEPTMLKGTVEVILFQNQDNFYTVLKVDTIESNESFDTMPTVVGFFPNIVEGDVYTFKGQVVAHPKYGKQLKAD
TFEKELPQTKDAIITYLSSDLFKGIGKKTAQNIVNTLGENAINDILAHPDILTKVSNLSKKKQEQIAQQIAANQESEKIM
IHLHDLGFGPKLSMAIYQFYQSETINVVDNNPYKLVYDIKGIGFNKADTLARNIGIDFNDPERLKAGILFTLEEECIKQG
HTYLPTETILKSAQTMLSTQGDEIIEIHQLEEMLQILMEEDKLILDQQKIAIPSLYYSELKSVQNLYRILTHTHKLNELE
QSDLQLHIGEIEDSNEVHYAASQKEALQTAINSKIMLLTGGPGTGKTTVIKGIIELYAEIHGLSLNYADYTDDDFPVVLA
APTGRASKRLQEATGLEAMTIHRLIGWNQDTQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFLNAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIQSKKIPRVNLTEVYRQQDGSSIIELAHHMKQNESIDITKRYHDRSFINCSAEQIPDVVKKVVSSAV
SKGYDMSDIQVLAPMYKGSAGIKRLNQILQTILNPKEPDAREIEFGDAAFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVIIVDFDGNEITFTRQDLIELTHAYCTSIHKSQGSEFPIVIMPVVKQYFRMLQKPILYTGLTRAKQSLVLL
GDPQAFDIGLKTNGQVRMTQLYDLLEAYFGHETQNSTDDNIIAKHKKVTLSAATIYQIDPMINMNQMTPYDFIER

Nucleotide

• Length: 2388 bp

>NTDB_id=1142518 DQL46_RS06315 WP_070815398.1 1320169..1322556(+) (recD2) [Staphylococcus lugdunensis strain NCTC12217]
ATGGATAACCCTACACTTTTTGAACCGACGATGTTAAAGGGCACCGTCGAAGTTATTTTGTTCCAAAATCAAGATAATTT
CTATACTGTACTTAAAGTTGATACCATTGAATCTAACGAATCGTTCGATACGATGCCAACGGTTGTAGGGTTTTTCCCAA
ATATTGTTGAAGGCGACGTATACACCTTTAAAGGACAGGTTGTTGCGCATCCAAAATATGGCAAACAACTAAAAGCTGAT
ACATTTGAAAAAGAATTACCACAAACGAAAGATGCTATTATTACCTACTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAGACAGCACAAAATATTGTTAATACTTTGGGAGAAAATGCAATAAATGATATTTTAGCTCATCCAGACATATTAACAA
AAGTTTCAAATCTTTCTAAAAAGAAACAAGAGCAAATTGCACAACAAATAGCAGCCAATCAAGAATCAGAAAAAATCATG
ATACACTTACATGATTTAGGATTTGGCCCTAAACTATCAATGGCAATCTATCAGTTTTATCAAAGTGAAACAATAAACGT
CGTTGATAATAACCCGTATAAACTTGTATATGATATTAAAGGAATTGGATTTAATAAAGCTGATACATTAGCACGTAATA
TCGGCATCGACTTTAATGACCCAGAACGATTAAAAGCTGGCATATTATTCACACTAGAGGAAGAATGTATTAAACAAGGG
CATACTTATTTACCTACTGAAACAATTCTTAAATCAGCACAAACAATGTTAAGTACGCAAGGGGATGAAATAATTGAAAT
ACATCAACTTGAAGAAATGTTGCAAATTTTAATGGAAGAAGATAAGTTGATTCTTGATCAACAAAAAATTGCCATCCCAA
GTCTTTACTACTCAGAATTAAAAAGCGTACAAAACTTATATCGTATATTAACTCATACCCATAAATTAAATGAACTTGAG
CAATCTGATTTACAGTTGCATATTGGAGAGATAGAAGATAGCAATGAAGTACATTATGCTGCATCACAAAAAGAAGCTTT
ACAAACAGCTATAAACTCAAAAATCATGTTATTGACTGGCGGACCTGGAACTGGTAAGACAACTGTCATTAAAGGTATTA
TAGAGTTATACGCTGAAATTCATGGACTTTCTTTAAATTATGCGGATTACACTGATGATGATTTCCCAGTAGTATTAGCA
GCTCCTACAGGCAGAGCATCGAAACGTTTACAAGAAGCTACTGGCTTAGAGGCAATGACCATCCACCGACTTATAGGATG
GAATCAAGATACACAACCAGAAGACATTTTAGATAATGAAATTAAAGCAAAATTAATTATCATAGATGAAATGTCTATGG
TTGACACTTGGTTATTTCATCAGTTTTTAAATGCGGTACCTTTAGATGCCCAAATTGTATTTGTTGGAGATGAAGACCAA
CTGCCTTCTGTTGGGCCTGGACAAGTATTTAAGGACTTAATCCAGTCTAAAAAAATACCACGTGTCAATTTAACTGAAGT
CTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCTCACCACATGAAACAAAACGAATCCATAGATATTACAAAAC
GTTATCATGATAGAAGCTTCATTAATTGTAGTGCAGAACAAATTCCTGACGTTGTTAAGAAAGTAGTATCCAGTGCAGTT
AGTAAAGGATATGACATGAGTGATATTCAAGTACTTGCTCCCATGTATAAAGGAAGTGCAGGTATTAAACGTTTAAATCA
AATTCTGCAAACAATTTTAAATCCTAAAGAACCAGACGCCCGTGAAATTGAATTTGGTGATGCTGCATTCCGCAAAGGCG
ATAAAGTATTACAGTTAGTAAATCGTCCTAATGACAATATTTTTAATGGAGATATTGGTATTATTGTTGGCATTTTTTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTTATTATCGTCGATTTTGACGGTAATGAAATTACATTTACACGACAAGACTT
AATTGAATTAACGCATGCATATTGCACTTCGATTCATAAGTCCCAAGGTTCAGAATTCCCAATCGTTATTATGCCCGTAG
TGAAACAATATTTTAGAATGTTACAAAAACCTATTCTTTATACTGGTTTGACTAGAGCTAAACAATCTTTAGTATTACTA
GGGGATCCACAAGCCTTTGACATTGGCCTTAAAACAAATGGTCAAGTTAGAATGACGCAATTATATGATTTATTAGAAGC
ATATTTTGGACACGAAACGCAGAATTCTACTGATGATAATATCATAGCTAAACATAAAAAAGTTACATTATCAGCAGCGA
CAATTTATCAAATAGATCCGATGATCAACATGAATCAAATGACGCCATATGACTTTATTGAACGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• AAA domain (AAA_30) (339-544)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.937	100	0.502