Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOKI828_RS02475 Genome accession   NZ_CP006826
Coordinates   507861..508145 (-) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori oki828     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502861..513145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI828_RS02450 (HPOKI828_02560) - 503518..504634 (-) 1117 Protein_482 VirB8/TrbF family protein -
  HPOKI828_RS02455 (HPOKI828_02565) - 504627..504761 (-) 135 WP_000738749.1 hypothetical protein -
  HPOKI828_RS02460 (HPOKI828_02570) - 504758..507340 (-) 2583 WP_025222676.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPOKI828_RS02465 (HPOKI828_02575) - 507340..507576 (-) 237 WP_001183709.1 hypothetical protein -
  HPOKI828_RS02470 (HPOKI828_02580) comB3 507587..507850 (-) 264 WP_001177715.1 hypothetical protein Machinery gene
  HPOKI828_RS02475 (HPOKI828_02585) comB2 507861..508145 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPOKI828_RS02480 (HPOKI828_02590) - 508142..508621 (-) 480 WP_025222677.1 hypothetical protein -
  HPOKI828_RS02485 (HPOKI828_02595) - 508725..509513 (-) 789 WP_025222678.1 hypothetical protein -
  HPOKI828_RS02490 - 509568..510338 (+) 771 Protein_490 DNA cytosine methyltransferase -
  HPOKI828_RS02495 - 510331..510597 (+) 267 Protein_491 restriction endonuclease -
  HPOKI828_RS02500 - 510798..511283 (+) 486 Protein_492 restriction endonuclease -
  HPOKI828_RS02505 (HPOKI828_02610) - 511522..512466 (-) 945 WP_025222681.1 catalase family peroxidase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=114249 HPOKI828_RS02475 WP_000736106.1 507861..508145(-) (comB2) [Helicobacter pylori oki828]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=114249 HPOKI828_RS02475 WP_000736106.1 507861..508145(-) (comB2) [Helicobacter pylori oki828]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0F3N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment