Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOKI673_RS07610 Genome accession   NZ_CP006825
Coordinates   1581642..1581923 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori oki673     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576642..1586923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI673_RS07595 (HPOKI673_07940) - 1577352..1578692 (-) 1341 WP_025314251.1 COG3014 family protein -
  HPOKI673_RS07600 (HPOKI673_07945) comB4 1579013..1581376 (-) 2364 WP_025314252.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOKI673_RS07605 (HPOKI673_07950) comB3 1581379..1581642 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  HPOKI673_RS07610 (HPOKI673_07955) comB2 1581642..1581923 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPOKI673_RS07615 (HPOKI673_07960) - 1582068..1582895 (-) 828 WP_025314253.1 DUF5718 family protein -
  HPOKI673_RS07620 (HPOKI673_07965) - 1582986..1584038 (-) 1053 WP_025314254.1 MnmA/TRMU family protein -
  HPOKI673_RS07625 (HPOKI673_07970) dnaG 1584035..1585714 (-) 1680 WP_025275435.1 DNA primase -
  HPOKI673_RS07630 (HPOKI673_07975) groES 1585990..1586346 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=114242 HPOKI673_RS07610 WP_001272686.1 1581642..1581923(-) (comB2) [Helicobacter pylori oki673]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=114242 HPOKI673_RS07610 WP_001272686.1 1581642..1581923(-) (comB2) [Helicobacter pylori oki673]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCTTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGTGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment