Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOKI673_RS02470 Genome accession   NZ_CP006825
Coordinates   505066..505350 (-) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori oki673     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500066..510350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI673_RS02445 (HPOKI673_02555) - 500723..501839 (-) 1117 Protein_487 VirB8/TrbF family protein -
  HPOKI673_RS02450 (HPOKI673_02560) - 501832..501966 (-) 135 WP_000738749.1 hypothetical protein -
  HPOKI673_RS02455 (HPOKI673_02565) - 501963..504545 (-) 2583 WP_025222676.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPOKI673_RS02460 (HPOKI673_02570) - 504545..504781 (-) 237 WP_001183709.1 hypothetical protein -
  HPOKI673_RS02465 (HPOKI673_02575) comB3 504792..505055 (-) 264 WP_001177715.1 hypothetical protein Machinery gene
  HPOKI673_RS02470 (HPOKI673_02580) comB2 505066..505350 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPOKI673_RS02475 (HPOKI673_02585) - 505347..505826 (-) 480 WP_025222677.1 hypothetical protein -
  HPOKI673_RS02480 (HPOKI673_02590) - 505930..506718 (-) 789 WP_025222678.1 hypothetical protein -
  HPOKI673_RS02485 - 506773..507543 (+) 771 Protein_495 DNA cytosine methyltransferase -
  HPOKI673_RS02490 - 507536..507802 (+) 267 Protein_496 restriction endonuclease -
  HPOKI673_RS02495 - 508003..508488 (+) 486 Protein_497 restriction endonuclease -
  HPOKI673_RS02505 (HPOKI673_02610) - 508725..509669 (-) 945 WP_025313766.1 catalase family peroxidase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=114226 HPOKI673_RS02470 WP_000736106.1 505066..505350(-) (comB2) [Helicobacter pylori oki673]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=114226 HPOKI673_RS02470 WP_000736106.1 505066..505350(-) (comB2) [Helicobacter pylori oki673]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0F3N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment