Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQN64_RS02810 Genome accession   NZ_LS483461
Coordinates   665954..667810 (+) Length   618 a.a.
NCBI ID   WP_111693689.1    Uniprot ID   -
Organism   Clostridium perfringens strain NCTC2837     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 660954..672810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN64_RS02795 (NCTC2837_00575) - 661967..662761 (+) 795 WP_111693687.1 HAD family hydrolase -
  DQN64_RS02800 (NCTC2837_00576) - 662895..663341 (-) 447 WP_011009876.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQN64_RS02805 (NCTC2837_00577) - 663664..665961 (+) 2298 WP_111693688.1 ABC transporter ATP-binding protein -
  DQN64_RS02810 (NCTC2837_00578) rcrQ 665954..667810 (+) 1857 WP_111693689.1 ABC transporter ATP-binding protein Regulator
  DQN64_RS02815 (NCTC2837_00579) - 668325..669206 (+) 882 WP_111693690.1 hypothetical protein -
  DQN64_RS02820 (NCTC2837_00580) - 669461..670510 (+) 1050 WP_003449992.1 AEC family transporter -
  DQN64_RS02825 (NCTC2837_00581) - 670837..671835 (+) 999 WP_003455390.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68492.25 Da        Isoelectric Point: 6.1490

>NTDB_id=1142220 DQN64_RS02810 WP_111693689.1 665954..667810(+) (rcrQ) [Clostridium perfringens strain NCTC2837]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKITGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLKYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPIAQMAQVANIMQSTAAAAERVFEFLEEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNEDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=1142220 DQN64_RS02810 WP_111693689.1 665954..667810(+) (rcrQ) [Clostridium perfringens strain NCTC2837]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGCGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCTTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAGATTTTAGGTAAAGCCACTACTAAAATATTTGAAGGTTTAGTT
CAAAAGATAACCGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGCAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAATTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAAGTATTTTGATACAAGAACAAACGGAGAAGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTTAACCAAACTTTAAATCAAAGTTTGTCACAGATAATAACTTCAGTGGTTACTTTAATTGG
GGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATATTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAACTAAACAA
TACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATCATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACTGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATAGCTCAAATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCCGCTGC
TGAGAGAGTATTTGAATTCTTAGAGGAAGAGGATGAAGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAGTTTGAAGATGTTCACTTTGGATATAATGAAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGTATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACTGATGCT
GAAGTTAAAGAGGCTGCTAAGGCTGCCCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTTTTAAA
TGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGTTAT
TAATACTTGACGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATACAAAAAGCTATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGGGA
TATAGTTGAACAAGGAAACCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.934

95.307

0.485

Multiple sequence alignment