Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQL12_RS12350 Genome accession   NZ_LS483450
Coordinates   1826711..1827532 (-) Length   273 a.a.
NCBI ID   WP_057524614.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6583227     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821711..1832532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL12_RS09845 - 1822255..1822572 (-) 318 WP_000615767.1 thioredoxin family protein -
  DQL12_RS09850 - 1822569..1822868 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  DQL12_RS09860 - 1823066..1823263 (-) 198 Protein_1834 N-acetylmuramoyl-L-alanine amidase family protein -
  DQL12_RS09865 - 1823505..1824179 (-) 675 WP_000725749.1 LiaF transmembrane domain-containing protein -
  DQL12_RS09870 - 1824185..1824631 (-) 447 WP_050255704.1 LytTR family DNA-binding domain-containing protein -
  DQL12_RS09875 - 1824745..1825248 (-) 504 WP_000800947.1 phosphatase PAP2 family protein -
  DQL12_RS09880 - 1825245..1825607 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  DQL12_RS12345 - 1825673..1826704 (-) 1032 Protein_1839 ATP-binding cassette domain-containing protein -
  DQL12_RS12350 rcrP 1826711..1827532 (-) 822 WP_057524614.1 ABC transporter permease Regulator
  DQL12_RS09890 - 1827548..1828019 (-) 472 Protein_1841 MarR family winged helix-turn-helix transcriptional regulator -
  DQL12_RS09900 - 1828143..1828859 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DQL12_RS09910 ply 1829740..1831155 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  DQL12_RS09915 - 1831166..1831576 (-) 411 WP_000595758.1 hypothetical protein -
  DQL12_RS09920 - 1831569..1832177 (-) 609 WP_000083614.1 hypothetical protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30540.11 Da        Isoelectric Point: 5.9257

>NTDB_id=1142029 DQL12_RS12350 WP_057524614.1 1826711..1827532(-) (rcrP) [Streptococcus pneumoniae strain 4041STDY6583227]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLDFPKQSLIQGLIDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMVGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=1142029 DQL12_RS12350 WP_057524614.1 1826711..1827532(-) (rcrP) [Streptococcus pneumoniae strain 4041STDY6583227]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACAGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATTTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTTTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGACTTTCCAAAACAGTCCTTGATTCAGGGGCTGATAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGGTGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593

Multiple sequence alignment