Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPOKI422_RS00095 Genome accession   NZ_CP006824
Coordinates   13802..14065 (+) Length   87 a.a.
NCBI ID   WP_000584964.1    Uniprot ID   -
Organism   Helicobacter pylori oki422     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8802..19065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI422_RS00070 (HPOKI422_00080) groES 9087..9443 (-) 357 WP_000671964.1 co-chaperone GroES -
  HPOKI422_RS00075 (HPOKI422_00090) dnaG 9729..11408 (+) 1680 WP_025276537.1 DNA primase -
  HPOKI422_RS00080 (HPOKI422_00095) - 11405..12457 (+) 1053 WP_025275436.1 MnmA/TRMU family protein -
  HPOKI422_RS00085 (HPOKI422_00100) - 12548..13375 (+) 828 WP_025275437.1 DUF5718 family protein -
  HPOKI422_RS00090 (HPOKI422_00105) comB2 13521..13802 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HPOKI422_RS00095 (HPOKI422_00110) comB3 13802..14065 (+) 264 WP_000584964.1 hypothetical protein Machinery gene
  HPOKI422_RS00100 (HPOKI422_00115) comB4 14067..16430 (+) 2364 WP_025275439.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOKI422_RS00105 (HPOKI422_00120) - 16732..18072 (+) 1341 WP_025276538.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=114202 HPOKI422_RS00095 WP_000584964.1 13802..14065(+) (comB3) [Helicobacter pylori oki422]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=114202 HPOKI422_RS00095 WP_000584964.1 13802..14065(+) (comB3) [Helicobacter pylori oki422]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment