Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ECONIH1_RS20250 Genome accession   NZ_CP009859
Coordinates   4064509..4065273 (+) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli strain ECONIH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4059509..4070273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECONIH1_RS20230 (ECONIH1_20230) acpT 4060463..4061050 (+) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -
  ECONIH1_RS20235 (ECONIH1_20235) nikA 4061161..4062735 (+) 1575 WP_022646227.1 nickel ABC transporter substrate-binding protein -
  ECONIH1_RS20240 (ECONIH1_20240) nikB 4062735..4063679 (+) 945 WP_000947080.1 nickel ABC transporter permease subunit NikB -
  ECONIH1_RS20245 (ECONIH1_20245) nikC 4063676..4064509 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  ECONIH1_RS20250 (ECONIH1_20250) amiE 4064509..4065273 (+) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  ECONIH1_RS20255 (ECONIH1_20255) nikE 4065270..4066076 (+) 807 WP_000173690.1 nickel import ATP-binding protein NikE -
  ECONIH1_RS20260 (ECONIH1_20260) nikR 4066081..4066482 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  ECONIH1_RS20265 (ECONIH1_20265) - 4066602..4066961 (-) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  ECONIH1_RS20270 (ECONIH1_20270) - 4066958..4067233 (-) 276 Protein_3895 type II toxin-antitoxin system HicA family toxin -
  ECONIH1_RS20275 (ECONIH1_20275) yhhJ 4067306..4068430 (-) 1125 WP_001314210.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=114199 ECONIH1_RS20250 WP_001136211.1 4064509..4065273(+) (amiE) [Escherichia coli strain ECONIH1]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=114199 ECONIH1_RS20250 WP_001136211.1 4064509..4065273(+) (amiE) [Escherichia coli strain ECONIH1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTTGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATTCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment