Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOKI154_RS07660 Genome accession   NZ_CP006823
Coordinates   1586440..1586721 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori oki154     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581440..1591721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI154_RS07645 (HPOKI154_07945) - 1582151..1583491 (-) 1341 WP_025367124.1 COG3014 family protein -
  HPOKI154_RS07650 (HPOKI154_07950) comB4 1583812..1586175 (-) 2364 WP_025367125.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOKI154_RS07655 (HPOKI154_07955) comB3 1586177..1586440 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  HPOKI154_RS07660 (HPOKI154_07960) comB2 1586440..1586721 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPOKI154_RS07665 (HPOKI154_07965) - 1586867..1587694 (-) 828 WP_025367126.1 DUF5718 family protein -
  HPOKI154_RS07670 (HPOKI154_07970) - 1587785..1588837 (-) 1053 WP_025367127.1 MnmA/TRMU family protein -
  HPOKI154_RS07675 (HPOKI154_07975) dnaG 1588834..1590513 (-) 1680 WP_025367128.1 DNA primase -
  HPOKI154_RS07680 (HPOKI154_07980) groES 1590798..1591154 (+) 357 WP_025367129.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=114199 HPOKI154_RS07660 WP_001272686.1 1586440..1586721(-) (comB2) [Helicobacter pylori oki154]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=114199 HPOKI154_RS07660 WP_001272686.1 1586440..1586721(-) (comB2) [Helicobacter pylori oki154]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATTCTTGGCGTGGTGTTTGGGATTTTTTTGTTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment